7S0S Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_7S0S_001 | 1/C/56:65 | No text annotation | homologous HL_5J7L_134 NA | |
HL_7S0S_002 | 1/C/84:93 | No text annotation | homologous HL_7RQB_002 NA | |
HL_7S0S_003 | 1/C/120:125 | No text annotation | homologous HL_4WF9_003 HL_75660.7 | |
HL_7S0S_004 | 1/C/134:141 | GNRA wlth tandem sheared | homologous HL_4WF9_004 HL_98423.3 | |
HL_7S0S_005 | 1/C/157:167 | No text annotation | homologous HL_5J7L_138 NA | |
HL_7S0S_006 | 1/C/193:200 | No text annotation | homologous HL_7A0S_006 HL_48677.1 | |
HL_7S0S_007 | 1/C/224:230 | No text annotation | homologous HL_5J7L_140 NA | |
HL_7S0S_008 | 1/C/246:252 | No text annotation | homologous HL_7RQB_008 NA | |
HL_7S0S_011 | 1/C/387:394 | T-loop with 1 bulged base | homologous HL_7A0S_010 HL_13999.3 | |
HL_7S0S_012 | 1/C/401:405 | No text annotation | homologous HL_5J7L_143 NA | |
HL_7S0S_013 | 1/C/409:417 | T-loop with unstacked turn | homologous HL_5J7L_144 NA | |
HL_7S0S_076 | 1/C/470:480 | No text annotation | homologous HL_5J7L_145 NA | |
HL_7S0S_015 | 1/C/498:505 | Pseudoknot geometry | homologous HL_5J7L_146 NA | |
HL_7S0S_016 | 1/C/550:555 | GNRA | homologous HL_7A0S_015 HL_34789.3 | |
HL_7S0S_017 | 1/C/575:580 | GNRA | homologous HL_7RQB_016 NA | |
HL_7S0S_019 | 1/C/658:667 | No text annotation | homologous HL_7RQB_018 NA | |
HL_7S0S_020 | 1/C/705:710 | No text annotation | geometric HL_4V9F_003 HL_75660.7 | |
HL_7S0S_021 | 1/C/723:728 | GNRA | homologous HL_7A0S_020 HL_34789.3 | |
HL_7S0S_022 | 1/C/735:741 | No text annotation | homologous HL_7RQB_021 NA | |
HL_7S0S_025 | 1/C/859:868 | No text annotation | homologous HL_7A0S_022 HL_50204.1 | |
HL_7S0S_026 | 1/C/894:900 | No text annotation | homologous HL_7RQB_024 NA | |
HL_7S0S_027 | 1/C/941:946 | No text annotation | homologous HL_7RQB_025 NA | |
HL_7S0S_029 | 1/C/1072:1079 | GNRA | homologous HL_7RQB_027 NA | |
HL_7S0S_030 | 1/C/1096:1103 | No text annotation | homologous HL_5J7L_160 NA | |
HL_7S0S_034 | 1/C/1336:1341 | GNRA | homologous HL_4WF9_031 HL_34789.3 | |
HL_7S0S_035 | 1/C/1396:1404 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_032 HL_33597.3 | |
HL_7S0S_036 | 1/C/1439:1445 | Pseudoknot geometry with 3' bulge | homologous HL_7A0S_033 HL_49081.1 | |
HL_7S0S_037 | 1/C/1478:1483 | GNRA | homologous HL_5J7L_167 NA | |
HL_7S0S_038 | 1/C/1504:1513 | No text annotation | homologous HL_7RQB_036 NA | |
HL_7S0S_040 | 1/C/1671:1682 | Pseudoknot | homologous HL_7A0S_036 HL_00824.1 | |
HL_7S0S_042 | 1/C/1753:1760 | No text annotation | ||
HL_7S0S_043 | 1/C/1785:1788 | Mini UNCG | geometric HL_5J7L_172 NA | |
HL_7S0S_044 | 1/C/1830:1837 | No text annotation | homologous HL_7RQB_040 NA | |
HL_7S0S_045 | 1/C/1848:1854 | GNRA | homologous HL_5J7L_174 NA | |
HL_7S0S_046 | 1/C/1909:1914 | No text annotation | homologous HL_7RQB_042 NA | |
HL_7S0S_049 | 1/C/1994:2004 | No text annotation | homologous HL_5J7L_178 NA | |
HL_7S0S_050 | 1/C/2023:2028 | GNRA related | homologous HL_5J7L_179 NA | |
HL_7S0S_053 | 1/C/2173:2181 | No text annotation | homologous HL_5J7L_182 NA | |
HL_7S0S_054 | 1/C/2251:2260 | No text annotation | homologous HL_7RQB_050 NA | |
HL_7S0S_056 | 1/C/2432:2439 | No text annotation | homologous HL_5J7L_185 NA | |
HL_7S0S_057 | 1/C/2472:2480 | No text annotation | homologous HL_5J7L_186 NA | |
HL_7S0S_058 | 1/C/2488:2500 | No text annotation | homologous HL_7RQB_054 NA | |
HL_7S0S_060 | 1/C/2548:2555 | Pseudoknot geometry | homologous HL_4WF9_052 HL_52651.2 | |
HL_7S0S_061 | 1/C/2579:2586 | GNRA with extra cWW | homologous HL_4WF9_053 HL_87268.2 | |
HL_7S0S_062 | 1/C/2598:2603 | GNRA | homologous HL_7RQB_058 NA | |
HL_7S0S_063 | 1/C/2628:2637 | No text annotation | homologous HL_5J7L_192 NA | |
HL_7S0S_064 | 1/C/2695:2703 | No text annotation | homologous HL_4WF9_056 HL_52011.1 | |
HL_7S0S_066 | 1/C/2775:2781 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
HL_7S0S_067 | 1/C/2818:2823 | GNRA | homologous HL_7RQB_063 NA | |
HL_7S0S_069 | 1/C/2925:2930 | Ribsomal LSU H95 | homologous HL_5J7L_198 NA | |
HL_7S0S_072 | 1/C/3040:3048 | No text annotation | homologous HL_7RQB_068 NA | |
HL_7S0S_078 | 1/i/35:49 | No text annotation | homologous HL_4V9F_074 HL_97756.3 | |
HL_7S0S_074 | 1/i/39:45 | No text annotation | homologous HL_5J7L_203 NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_7S0S_009 | No text annotation | ||
HL_7S0S_010 | No text annotation | ||
HL_7S0S_014 | No text annotation | ||
HL_7S0S_018 | Externally structured | ||
HL_7S0S_023 | No text annotation | ||
HL_7S0S_024 | No text annotation | ||
HL_7S0S_028 | No text annotation | ||
HL_7S0S_031 | No text annotation | ||
HL_7S0S_032 | GNRA related | ||
HL_7S0S_033 | No text annotation | ||
HL_7S0S_039 | No text annotation | ||
HL_7S0S_041 | Pseudoknot geometry with 3' bulge | ||
HL_7S0S_047 | No text annotation | ||
HL_7S0S_048 | No text annotation | ||
HL_7S0S_051 | No text annotation | ||
HL_7S0S_052 | No text annotation | ||
HL_7S0S_055 | UNCG | ||
HL_7S0S_059 | No text annotation | ||
HL_7S0S_077 | No text annotation | ||
HL_7S0S_065 | GNRA variation | ||
HL_7S0S_068 | GNRA | ||
HL_7S0S_070 | No text annotation | ||
HL_7S0S_071 | No text annotation | ||
HL_7S0S_073 | GNRA | ||
HL_7S0S_075 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_7S0S_001 | 1/C/21:27, 1/C/597:603 | Triple sheared with non-canonical cWW | geometric IL_5J7L_245 NA | |
IL_7S0S_002 | 1/C/33:34, 1/C/530:532 | Single bulged A | homologous IL_7A0S_002 IL_14190.2 | |
IL_7S0S_003 | 1/C/40:41, 1/C/522:524 | Minor groove platform | homologous IL_7A0S_003 IL_34520.3 | |
IL_7S0S_004 | 1/C/78:82, 1/C/95:102 | Kink-turn | homologous IL_7RQB_004 NA | |
IL_7S0S_005 | 1/C/182:183, 1/C/211:213 | Single stack bend | homologous IL_4WF9_007 IL_15011.2 | |
IL_7S0S_006 | 1/C/187:193, 1/C/200:207 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_4V9F_006 IL_62167.3 | |
IL_7S0S_007 | 1/C/239:245, 1/C/253:258 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_7RQB_007 NA | |
IL_7S0S_008 | 1/C/322:324, 1/C/452:454 | Isolated non-canonical cWW pair | geometric IL_4V9F_047 IL_71625.2 | |
IL_7S0S_129 | 1/C/322:325, 1/C/450:454 | No text annotation | ||
IL_7S0S_010 | 1/C/356:364, 1/C/438:439 | No text annotation | ||
IL_7S0S_011 | 1/C/369:371, 1/C/432:433 | Single bulged U | geometric IL_4V9F_107 IL_97561.3 | |
IL_7S0S_012 | 1/C/374:376, 1/C/425:429 | No text annotation | homologous IL_7RQB_013 NA | |
IL_7S0S_013 | 1/C/382:384, 1/C/397:398 | Single bulged U | geometric IL_3TZR_002 IL_97561.3 | |
IL_7S0S_014 | 1/C/569:572, 1/C/583:596 | No text annotation | homologous IL_4WF9_015 IL_44923.1 | |
IL_7S0S_015 | 1/C/623:626, 1/C/646:649 | Double sheared | homologous IL_5J7L_256 NA | |
IL_7S0S_016 | 1/C/630:631, 1/C/640:642 | Single bulged U | geometric IL_1S03_005 IL_97561.3 | |
IL_7S0S_017 | 1/C/656:658, 1/C/667:669 | Isolated non-canonical cWW pair | geometric IL_4WF9_017 IL_71625.2 | |
IL_7S0S_018 | 1/C/683:685, 1/C/780:781 | Single bulged A | homologous IL_7A0S_012 IL_14190.2 | |
IL_7S0S_019 | 1/C/699:703, 1/C/712:716 | AAA cross-strand stack | homologous IL_7A0S_013 IL_66798.3 | |
IL_7S0S_020 | 1/C/787:789, 1/C/921:923 | Isolated non-canonical cWW pair | homologous IL_4WF9_020 IL_01003.3 | |
IL_7S0S_021 | 1/C/789:793, 1/C/914:921 | tHW-tHW cross-strand stack | geometric IL_5J7L_260 NA | |
IL_7S0S_022 | 1/C/812:813, 1/C/878:880 | Single bulged A | geometric IL_4WF9_022 IL_14190.2 | |
IL_7S0S_023 | 1/C/817:818, 1/C/843:845 | Single bulged G | geometric IL_7A0S_017 IL_28408.2 | |
IL_7S0S_024 | 1/C/818:822, 1/C/839:843 | Triple sheared | homologous IL_7RQB_021 NA | |
IL_7S0S_025 | 1/C/853:855, 1/C/872:873 | Major groove platform | homologous IL_5J7L_264 NA | |
IL_7S0S_026 | 1/C/890:892, 1/C/902:906 | Multiple bulged bases | homologous IL_5J7L_265 NA | |
IL_7S0S_027 | 1/C/952:953, 1/C/1057:1059 | Single stack bend | homologous IL_4WF9_028 IL_15011.2 | |
IL_7S0S_028 | 1/C/959:961, 1/C/1048:1051 | Isolated near basepair | geometric IL_4V88_406 NA | |
IL_7S0S_130 | 1/C/959:964, 1/C/1043:1051 | No text annotation | ||
IL_7S0S_029 | 1/C/961:964, 1/C/1043:1048 | No text annotation | ||
IL_7S0S_032 | 1/C/979:984, 1/C/1024:1027 | C-loop | homologous IL_7RQB_029 NA | |
IL_7S0S_033 | 1/C/986:988, 1/C/1020:1022 | Isolated cWS basepair | homologous IL_4WF9_034 NA | |
IL_7S0S_036 | 1/C/1066:1067, 1/C/1084:1086 | Single bulged G | geometric IL_4LVW_002 IL_28408.2 | |
IL_7S0S_038 | 1/C/1116:1120, 1/C/1272:1276 | UAA/GAN | homologous IL_4WF9_036 IL_08938.1 | |
IL_7S0S_039 | 1/C/1122:1129, 1/C/1269:1270 | SSU/LSU pseudoknot | geometric IL_7RQB_037 NA | |
IL_7S0S_042 | 1/C/1142:1148, 1/C/1242:1258 | No text annotation | geometric IL_4WF9_040 IL_50715.4 | |
IL_7S0S_043 | 1/C/1149:1152, 1/C/1239:1241 | Isolated non-canonical cWW pair | homologous IL_7A0S_038 IL_76400.1 | |
IL_7S0S_047 | 1/C/1311:1313, 1/C/1362:1365 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.5 | |
IL_7S0S_048 | 1/C/1322:1329, 1/C/1349:1353 | Kink-turn | homologous IL_5J7L_288 NA | |
IL_7S0S_049 | 1/C/1333:1334, 1/C/1343:1345 | Single bulged A | geometric IL_2VPL_002 IL_14190.2 | |
IL_7S0S_050 | 1/C/1377:1384, 1/C/2235:2241 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5J7L_289 NA | |
IL_7S0S_051 | 1/C/1425:1428, 1/C/1821:1822 | Major groove platform; stack outside cWW | homologous IL_7A0S_046 IL_74641.2 | |
IL_7S0S_052 | 1/C/1434:1438, 1/C/1446:1448 | C-loop | homologous IL_7A0S_047 IL_06671.1 | |
IL_7S0S_053 | 1/C/1466:1470, 1/C/1491:1495 | UAA/GAN | homologous IL_5J7L_292 NA | |
IL_7S0S_054 | 1/C/1472:1476, 1/C/1485:1489 | tSH-tHW-tHS | homologous IL_5J7L_293 NA | |
IL_7S0S_058 | 1/C/1560:1562, 1/C/1609:1611 | Isolated non-canonical cWW pair | geometric IL_3GM7_004 IL_01003.3 | |
IL_7S0S_063 | 1/C/1653:1656, 1/C/1777:1781 | Tandem non-canonical cWW pairs | homologous IL_5J7L_296 NA | |
IL_7S0S_064 | 1/C/1658:1661, 1/C/1771:1775 | tSH-tHW | homologous IL_7RQB_057 NA | |
IL_7S0S_065 | 1/C/1689:1692, 1/C/1742:1746 | No text annotation | homologous IL_5J7L_299 NA | |
IL_7S0S_066 | 1/C/1694:1699, 1/C/1735:1740 | 5x5 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_7A0S_027 NA | |
IL_7S0S_069 | 1/C/1869:1874, 1/C/2228:2230 | No text annotation | ||
IL_7S0S_070 | 1/C/1881:1883, 1/C/2219:2221 | Isolated tWW turn | homologous IL_5J7L_305 NA | |
IL_7S0S_071 | 1/C/1884:1887, 1/C/2217:2218 | Major groove platform; stack outside cWW | geometric IL_5J7L_306 NA | |
IL_7S0S_135 | 1/C/1884:1892, 1/C/2214:2218 | No text annotation | homologous IL_5J7L_386 NA | |
IL_7S0S_072 | 1/C/1887:1892, 1/C/2214:2217 | Intercalated tWH | homologous IL_5J7L_307 NA | |
IL_7S0S_073 | 1/C/1904:1909, 1/C/1914:1920 | tSH-tSH-tHH-tHS | geometric IL_7RQB_068 NA | |
IL_7S0S_076 | 1/C/1944:1945, 1/C/1948:1950 | Single bulged C | geometric IL_5J7L_311 NA | |
IL_7S0S_077 | 1/C/1987:1988, 1/C/2204:2206 | Single bulged A | homologous IL_7RQB_069 NA | |
IL_7S0S_078 | 1/C/2015:2021, 1/C/2030:2038 | Kink-turn related | homologous IL_7RQB_070 NA | |
IL_7S0S_079 | 1/C/2054:2057, 1/C/2126:2127 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
IL_7S0S_080 | 1/C/2058:2059, 1/C/2122:2125 | Major groove intercalation | homologous IL_5J7L_315 NA | |
IL_7S0S_081 | 1/C/2063:2066, 1/C/2117:2118 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 NA | |
IL_7S0S_082 | 1/C/2068:2072, 1/C/2111:2115 | UAA/GAN with extra stack | homologous IL_7RQB_074 NA | |
IL_7S0S_083 | 1/C/2073:2078, 1/C/2105:2110 | No text annotation | geometric IL_5TBW_026 NA | |
IL_7S0S_084 | 1/C/2081:2084, 1/C/2098:2102 | UAA/GAN related | homologous IL_5J7L_317 NA | |
IL_7S0S_087 | 1/C/2157:2158, 1/C/2188:2191 | Bulged stacked bases | homologous IL_4WF9_076 IL_24886.2 | |
IL_7S0S_088 | 1/C/2158:2169, 1/C/2185:2188 | No text annotation | geometric IL_7A0S_072 IL_04332.3 | |
IL_7S0S_089 | 1/C/2274:2276, 1/C/2841:2842 | Major groove platform | homologous IL_7RQB_078 NA | |
IL_7S0S_090 | 1/C/2278:2280, 1/C/2836:2839 | No text annotation | homologous IL_4WF9_079 IL_80025.1 | |
IL_7S0S_091 | 1/C/2293:2294, 1/C/2662:2665 | Minor groove platform | homologous IL_7A0S_076 IL_34520.3 | |
IL_7S0S_092 | 1/C/2304:2306, 1/C/2460:2463 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
IL_7S0S_093 | 1/C/2308:2310, 1/C/2456:2458 | No text annotation | homologous IL_7RQB_083 NA | |
IL_7S0S_094 | 1/C/2317:2319, 1/C/2416:2418 | Isolated non-canonical cWW pair | geometric IL_5TBW_021 NA | |
IL_7S0S_099 | 1/C/2425:2427, 1/C/2444:2445 | Single bulged U | homologous IL_5J7L_331 NA | |
IL_7S0S_100 | 1/C/2521:2523, 1/C/2541:2545 | Isolated tHS basepair with bulges | homologous IL_7RQB_088 NA | |
IL_7S0S_101 | 1/C/2574:2577, 1/C/2588:2591 | Double sheared | homologous IL_5J7L_333 NA | |
IL_7S0S_102 | 1/C/2625:2627, 1/C/2638:2639 | Single bulged U | homologous IL_4WF9_088 IL_97561.3 | |
IL_7S0S_103 | 1/C/2677:2678, 1/C/2722:2724 | Single stack bend | geometric IL_7A0S_083 IL_15011.2 | |
IL_7S0S_104 | 1/C/2678:2679, 1/C/2720:2722 | Major groove platform | homologous IL_4WF9_090 IL_48076.8 | |
IL_7S0S_105 | 1/C/2681:2683, 1/C/2717:2718 | Major groove platform | geometric IL_7A0S_085 IL_48076.8 | |
IL_7S0S_106 | 1/C/2683:2685, 1/C/2713:2717 | Major groove minor groove platform with extra cWW | geometric IL_7RQB_094 NA | |
IL_7S0S_107 | 1/C/2685:2687, 1/C/2711:2713 | Isolated non-canonical cWW pair | geometric IL_3BNN_005 IL_71625.2 | |
IL_7S0S_108 | 1/C/2690:2694, 1/C/2704:2708 | Double sheared with non-canonical cWW | homologous IL_4WF9_093 IL_87767.2 | |
IL_7S0S_109 | 1/C/2731:2732, 1/C/2804:2806 | Major groove platform | homologous IL_7RQB_096 NA | |
IL_7S0S_110 | 1/C/2734:2736, 1/C/2798:2802 | Isolated non-canonical cWW with bulges | geometric IL_5J7L_340 NA | |
IL_7S0S_111 | 1/C/2736:2737, 1/C/2795:2798 | No text annotation | homologous IL_5J7L_341 NA | |
IL_7S0S_112 | 1/C/2746:2747, 1/C/2764:2767 | Major groove platform with intercalation | homologous IL_7A0S_091 IL_94991.2 | |
IL_7S0S_113 | 1/C/2815:2816, 1/C/2825:2827 | Single bulged A | homologous IL_7RQB_101 NA | |
IL_7S0S_114 | 1/C/2860:2864, 1/C/2998:3006 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
IL_7S0S_115 | 1/C/2876:2882, 1/C/2887:2892 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7A0S_094 IL_16458.6 | |
IL_7S0S_116 | 1/C/2904:2908, 1/C/2949:2951 | C-loop | homologous IL_7RQB_104 NA | |
IL_7S0S_117 | 1/C/2911:2915, 1/C/2942:2946 | UAA/GAN related, with intercalation | homologous IL_4WF9_102 IL_82016.1 | |
IL_7S0S_118 | 1/C/2919:2920, 1/C/2935:2938 | Multiple bulged bases | homologous IL_5J7L_349 NA | |
IL_7S0S_119 | 1/C/2961:2966, 1/C/2986:2991 | UAA/GAN with extra cWW | homologous IL_5J7L_350 NA | |
IL_7S0S_120 | 1/C/3059:3061, 1/C/3098:3101 | Isolated non-canonical cWW with bulges | geometric IL_4V9F_097 IL_68118.3 | |
IL_7S0S_121 | 1/C/3064:3066, 1/C/3092:3095 | No text annotation | homologous IL_4WF9_107 IL_05502.1 | |
IL_7S0S_122 | 1/C/3068:3073, 1/C/3086:3090 | tHS double platform | homologous IL_4WF9_108 IL_48489.1 | |
IL_7S0S_124 | 1/i/18:19, 1/i/66:68 | Major groove intercalation | homologous IL_4WF9_112 IL_14190.2 | |
IL_7S0S_128 | 1/i/72:80, 1/i/95:103 | Bacterial 5S Loop E | homologous IL_5J7L_359 NA |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_7S0S_009 | Single stack bend | ||
IL_7S0S_030 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | ||
IL_7S0S_031 | Minor groove platform | ||
IL_7S0S_034 | Triple sheared related | ||
IL_7S0S_035 | No text annotation | ||
IL_7S0S_037 | Single bulged C | ||
IL_7S0S_040 | Single bulged U | ||
IL_7S0S_041 | Kink-turn related | ||
IL_7S0S_044 | Kink-turn | ||
IL_7S0S_131 | No text annotation | ||
IL_7S0S_045 | No text annotation | ||
IL_7S0S_046 | No text annotation | ||
IL_7S0S_055 | Isolated near basepair | ||
IL_7S0S_056 | No text annotation | ||
IL_7S0S_132 | No text annotation | ||
IL_7S0S_057 | No text annotation | ||
IL_7S0S_059 | No text annotation | ||
IL_7S0S_133 | No text annotation | ||
IL_7S0S_060 | No text annotation | ||
IL_7S0S_134 | No text annotation | ||
IL_7S0S_061 | No text annotation | ||
IL_7S0S_062 | Other IL | ||
IL_7S0S_067 | No text annotation | ||
IL_7S0S_068 | No text annotation | ||
IL_7S0S_074 | Tandem non-canonical cWW pairs | ||
IL_7S0S_075 | No text annotation | ||
IL_7S0S_085 | Single stack bend | ||
IL_7S0S_086 | Single stack bend | ||
IL_7S0S_095 | No text annotation | ||
IL_7S0S_137 | No text annotation | ||
IL_7S0S_096 | No text annotation | ||
IL_7S0S_136 | No text annotation | ||
IL_7S0S_097 | No text annotation | ||
IL_7S0S_098 | No text annotation | ||
IL_7S0S_123 | Single bulged A | ||
IL_7S0S_125 | No text annotation | ||
IL_7S0S_126 | Major groove minor groove platform; mini C-loop | ||
IL_7S0S_127 | Symmetric double minor groove platform |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_7S0S_001 | 1/C/27:28, 1/C/562:569, 1/C/596:597 | No text annotation | homologous J3_5J7L_036 NA | |
J3_7S0S_017 | 1/C/27:28, 1/C/562:572, 1/C/583:597 | No text annotation | homologous J3_5J7L_066 NA | |
J3_7S0S_018 | 1/C/29:32, 1/C/533:549, 1/C/556:561 | No text annotation | homologous J3_5J7L_067 NA | |
J3_7S0S_002 | 1/C/53:54, 1/C/67:73, 1/C/107:111 | No text annotation | homologous J3_7RQB_002 NA | |
J3_7S0S_003 | 1/C/317:319, 1/C/457:463, 1/C/487:492 | No text annotation | ||
J3_7S0S_020 | 1/C/378:382, 1/C/398:407, 1/C/419:423 | No text annotation | homologous J3_4WF9_015 J3_77124.1 | |
J3_7S0S_004 | 1/C/798:804, 1/C/888:890, 1/C/906:909 | No text annotation | homologous J3_5J7L_038 NA | |
J3_7S0S_005 | 1/C/813:815, 1/C/847:851, 1/C/875:878 | No text annotation | homologous J3_7RQB_005 NA | |
J3_7S0S_007 | 1/C/1413:1418, 1/C/1843:1845, 1/C/1857:1860 | No text annotation | homologous J3_5J7L_041 NA | |
J3_7S0S_008 | 1/C/1421:1424, 1/C/1823:1829, 1/C/1838:1840 | No text annotation | homologous J3_7A0S_007 J3_47341.1 | |
J3_7S0S_009 | 1/C/1459:1465, 1/C/1496:1500, 1/C/1517:1518 | No text annotation | homologous J3_7RQB_009 NA | |
J3_7S0S_011 | 1/C/1646:1650, 1/C/1784:1785, 1/C/1788:1793 | No text annotation | geometric J3_4V9F_017 J3_08594.1 | |
J3_7S0S_012 | 1/C/2314:2316, 1/C/2419:2423, 1/C/2447:2452 | Kink-turn 3-way junction | homologous J3_5J7L_044 NA | |
J3_7S0S_021 | 1/C/2506:2508, 1/C/2608:2619, 1/C/2645:2651 | No text annotation | homologous J3_5J7L_070 NA | |
J3_7S0S_013 | 1/C/2519:2521, 1/C/2545:2547, 1/C/2556:2561 | No text annotation | homologous J3_4WF9_008 J3_05327.1 | |
J3_7S0S_014 | 1/C/2741:2744, 1/C/2769:2771, 1/C/2785:2791 | No text annotation | homologous J3_7RQB_012 NA | |
J3_7S0S_015 | 1/C/3035:3037, 1/C/3051:3057, 1/C/3103:3107 | No text annotation | ||
J3_7S0S_016 | 1/i/11:17, 1/i/69:71, 1/i/104:107 | No text annotation | ||
J4_7S0S_001 | 1/C/269:274, 1/C/312:317, 1/C/492:494, 1/C/509:512 | No text annotation | ||
J4_7S0S_002 | 1/C/378:382, 1/C/398:401, 1/C/405:407, 1/C/419:423 | No text annotation | homologous J4_4WF9_002 J4_16174.1 | |
J4_7S0S_003 | 1/C/1385:1391, 1/C/1409:1410, 1/C/1863:1866, 1/C/2233:2234 | No text annotation | homologous J4_7A0S_004 J4_64571.6 | |
J4_7S0S_004 | 1/C/1425:1429, 1/C/1453:1458, 1/C/1519:1520, 1/C/1815:1822 | No text annotation | homologous J4_4WF9_005 J4_77353.1 | |
J4_7S0S_005 | 1/C/1428:1429, 1/C/1453:1458, 1/C/1519:1520, 1/C/1815:1821 | No text annotation | homologous J4_4WF9_006 J4_48150.1 | |
J4_7S0S_006 | 1/C/1664:1667, 1/C/1686:1688, 1/C/1747:1751, 1/C/1762:1768 | No text annotation | ||
J4_7S0S_007 | 1/C/1989:1993, 1/C/2005:2009, 1/C/2044:2047, 1/C/2199:2203 | No text annotation | homologous J4_5J7L_025 NA | |
J4_7S0S_008 | 1/C/2050:2052, 1/C/2129:2130, 1/C/2148:2157, 1/C/2191:2196 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
J4_7S0S_009 | 1/C/2509:2513, 1/C/2567:2571, 1/C/2594:2596, 1/C/2605:2607 | No text annotation | homologous J4_9DFE_009 J4_98139.1 | |
J4_7S0S_010 | 1/C/2867:2870, 1/C/2898:2900, 1/C/2955:2959, 1/C/2993:2995 | No text annotation | homologous J4_4WF9_009 J4_77044.5 | |
J5_7S0S_001 | 1/C/44:51, 1/C/113:118, 1/C/127:128, 1/C/147:149, 1/C/175:177 | No text annotation | homologous J5_9DFE_001 J5_27223.1 | |
J5_7S0S_002 | 1/C/269:274, 1/C/312:319, 1/C/457:463, 1/C/487:494, 1/C/509:512 | No text annotation | ||
J5_7S0S_003 | 1/C/618:620, 1/C/652:656, 1/C/669:671, 1/C/1376:1377, 1/C/2241:2242 | No text annotation | homologous J5_9DFE_003 J5_43153.6 | |
J5_7S0S_004 | 1/C/676:681, 1/C/783:786, 1/C/924:927, 1/C/1310:1311, 1/C/1365:1371 | No text annotation | homologous J5_4WF9_004 J5_74302.6 | |
J5_7S0S_005 | 1/C/694:697, 1/C/718:722, 1/C/729:732, 1/C/744:749, 1/C/766:771 | No text annotation | ||
J5_7S0S_006 | 1/C/1892:1900, 1/C/1924:1925, 1/C/1968:1969, 1/C/1973:1981, 1/C/2212:2214 | No text annotation | homologous J5_5J7L_016 NA | |
J5_7S0S_007 | 1/C/2281:2288, 1/C/2670:2677, 1/C/2724:2731, 1/C/2806:2812, 1/C/2830:2835 | No text annotation | ||
J5_7S0S_008 | 1/C/2297:2300, 1/C/2467:2470, 1/C/2482:2483, 1/C/2505:2506, 1/C/2651:2659 | No text annotation | homologous J5_4WF9_007 J5_39529.2 | |
J6_7S0S_001 | 1/C/42:43, 1/C/178:182, 1/C/213:223, 1/C/231:235, 1/C/262:267, 1/C/514:521 | No text annotation | ||
J6_7S0S_002 | 1/C/2297:2300, 1/C/2467:2470, 1/C/2482:2483, 1/C/2505:2508, 1/C/2608:2619, 1/C/2645:2659 | No text annotation | ||
J7_7S0S_001 | 1/C/932:937, 1/C/950:951, 1/C/1060:1063, 1/C/1089:1094, 1/C/1105:1109, 1/C/1282:1283, 1/C/1300:1305 | No text annotation | ||
J8_7S0S_001 | 1/C/5:12, 1/C/612:618, 1/C/2242:2247, 1/C/2264:2267, 1/C/2849:2854, 1/C/3012:3015, 1/C/3027:3032, 1/C/3110:3115 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_7S0S_019 | No text annotation | ||
J3_7S0S_006 | No text annotation | ||
J3_7S0S_010 | No text annotation |
Coloring options: