HL_7S0S_040

3D structure

PDB id

7S0S (explore in PDB, NAKB, or RNA 3D Hub)

Description

M. tuberculosis ribosomal RNA methyltransferase TlyA bound to M. smegmatis 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3.05 Å

Loop

Sequence

UCAGUGGUAAUA

Length

12 nucleotides

Bulged bases

7S0S|1|C|G|1674, 7S0S|1|C|U|1675

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S0S_040 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.5468

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_00824.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7S0S|1|C|U|1671
7S0S|1|C|C|1672
7S0S|1|C|A|1673
7S0S|1|C|G|1674
7S0S|1|C|U|1675
7S0S|1|C|G|1676
7S0S|1|C|G|1677
7S0S|1|C|U|1678
7S0S|1|C|A|1679
7S0S|1|C|A|1680
7S0S|1|C|U|1681
7S0S|1|C|A|1682

Current chains

Chain C

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L17