HL_7S1G_017

3D structure

PDB id

7S1G (explore in PDB, NAKB, or RNA 3D Hub)

Description

wild-type Escherichia coli stalled ribosome with antibiotic linezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S1G_017 not in the Motif Atlas

Homologous match to HL_5J7L_014

Geometric discrepancy: 0.105

The information below is about HL_5J7L_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7S1G|1|C|G|617
7S1G|1|C|C|618
7S1G|1|C|U|619
7S1G|1|C|C|620
7S1G|1|C|A|621
7S1G|1|C|A|622
7S1G|1|C|C|623

Current chains

Chain C

16S rRNA

Nearby chains

Chain F

30S ribosomal protein S4

Chain x

30S ribosomal protein S16