HL_7S1H_041

3D structure

PDB id

7S1H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic linezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

7S1H|1|I|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S1H_041 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.1139

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

7S1H|1|I|C|305
7S1H|1|I|U|306
7S1H|1|I|G|307
7S1H|1|I|G|308
7S1H|1|I|A|309
7S1H|1|I|A|310
7S1H|1|I|A|311
7S1H|1|I|G|312

Current chains

Chain I

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L24