RNA 3D Hub //

7S1H Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_7S1H_0011/C/12:22No text annotation
homologous
HL_4LFB_001
HL_31940.1
HL_7S1H_0031/C/158:163GNRA
homologous
HL_5J7L_003
NA
HL_7S1H_0041/C/186:191GNRA
homologous
HL_5J7L_004
NA
HL_7S1H_0061/C/259:267GNRA related
homologous
HL_5J7L_006
NA
HL_7S1H_0071/C/296:301GNRA
homologous
HL_5J7L_007
NA
HL_7S1H_0081/C/320:333No text annotation
homologous
HL_4LFB_008
HL_39665.1
HL_7S1H_0091/C/342:347UNCG
homologous
HL_4LFB_009
HL_61337.1
HL_7S1H_0101/C/379:384GNRA
homologous
HL_5J7L_010
NA
HL_7S1H_0111/C/419:424UNCG
homologous
HL_5J7L_011
NA
HL_7S1H_0121/C/462:470GNRA wlth extra near cWW
homologous
HL_5J7L_012
NA
HL_7S1H_0131/C/522:527No text annotation
geometric
HL_4WF9_003
HL_75660.6
HL_7S1H_0141/C/617:623GNRA-like with tWH
homologous
HL_5J7L_014
NA
HL_7S1H_0151/C/689:698No text annotation
homologous
HL_5J7L_015
NA
HL_7S1H_0161/C/726:731GNRA
homologous
HL_5J7L_016
NA
HL_7S1H_0171/C/786:796No text annotation
homologous
HL_5J7L_017
NA
HL_7S1H_0191/C/862:867GNRA
homologous
HL_5J7L_019
NA
HL_7S1H_0201/C/897:902GNRA
homologous
HL_4LFB_020
HL_34789.1
HL_7S1H_0211/C/963:972No text annotation
homologous
HL_5J7L_021
NA
HL_7S1H_0221/C/1012:1017GNRA
homologous
HL_4LFB_022
HL_34789.1
HL_7S1H_0241/C/1076:1081GNRA
homologous
HL_4LFB_024
HL_34789.1
HL_7S1H_0251/C/1089:1096T-loop related
homologous
HL_4LFB_025
HL_63894.1
HL_7S1H_0261/C/1134:1140No text annotation
homologous
HL_4LFB_026
HL_92935.1
HL_7S1H_0271/C/1165:1171GNRA
homologous
HL_5J7L_026
NA
HL_7S1H_0281/C/1265:1270GNRA
homologous
HL_5J7L_027
NA
HL_7S1H_0291/C/1314:1323T-loop with 3 stacked bulged bases
homologous
HL_4LFB_029
HL_93658.1
HL_7S1H_0301/C/1356:1366No text annotation
homologous
HL_4LFB_030
HL_86432.1
HL_7S1H_0311/C/1449:1454UNCG
homologous
HL_5J7L_030
NA
HL_7S1H_0321/C/1515:1520GNRA
homologous
HL_6CZR_103
NA
HL_7S1H_0331/I/59:68No text annotation
homologous
HL_5J7L_134
NA
HL_7S1H_0341/I/87:95No text annotation
homologous
HL_5J7L_135
NA
HL_7S1H_0351/I/123:128No text annotation
homologous
HL_5J7L_136
NA
HL_7S1H_0361/I/137:142UNCG
geometric
HL_4AY2_001
NA
HL_7S1H_0371/I/158:168No text annotation
homologous
HL_5J7L_138
NA
HL_7S1H_0381/I/194:201No text annotation
geometric
HL_4WF9_006
HL_48677.1
HL_7S1H_0391/I/225:230No text annotation
homologous
HL_5J7L_140
NA
HL_7S1H_0401/I/246:252No text annotation
homologous
HL_5J7L_141
NA
HL_7S1H_0411/I/305:312T-loop with 2 stacked bulged bases
homologous
HL_5J7L_142
NA
HL_7S1H_0421/I/319:323No text annotation
homologous
HL_5J7L_143
NA
HL_7S1H_0431/I/327:335T-loop with unstacked turn
homologous
HL_5J7L_144
NA
HL_7S1H_0441/I/382:392No text annotation
homologous
HL_5J7L_145
NA
HL_7S1H_0451/I/410:417Pseudoknot geometry
homologous
HL_5J7L_146
NA
HL_7S1H_0461/I/462:467GNRA
homologous
HL_7RQB_015
NA
HL_7S1H_0471/I/487:493GNRA
homologous
HL_5J7L_148
NA
HL_7S1H_0481/I/544:549No text annotation
geometric
HL_8C3A_039
NA
HL_7S1H_0491/I/566:575T-loop with 2 stacked bulged bases
homologous
HL_5J7L_150
NA
HL_7S1H_0501/I/611:617No text annotation
homologous
HL_5J7L_151
NA
HL_7S1H_0511/I/629:634GNRA
homologous
HL_5J7L_152
NA
HL_7S1H_0521/I/641:647No text annotation
homologous
HL_5J7L_153
NA
HL_7S1H_0531/I/712:719GNRA wlth tandem sheared
homologous
HL_5J7L_154
NA
HL_7S1H_0541/I/744:753No text annotation
homologous
HL_5J7L_155
NA
HL_7S1H_0551/I/779:785No text annotation
homologous
HL_5J7L_156
NA
HL_7S1H_0561/I/826:831No text annotation
homologous
HL_4WF9_025
HL_27530.1
HL_7S1H_1041/I/955:962GNRA
homologous
HL_5J7L_211
NA
HL_7S1H_0591/I/978:985No text annotation
homologous
HL_5J7L_160
NA
HL_7S1H_0631/I/1222:1227GNRA
homologous
HL_5J7L_164
NA
HL_7S1H_0641/I/1281:1289T-loop with 2 stacked bulged bases
homologous
HL_5J7L_165
NA
HL_7S1H_0651/I/1324:1330Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_166
NA
HL_7S1H_0661/I/1363:1368GNRA
homologous
HL_5J7L_167
NA
HL_7S1H_0671/I/1389:1398No text annotation
homologous
HL_5J7L_168
NA
HL_7S1H_0681/I/1451:1459Mini UNCG with extended bulge
homologous
HL_5J7L_169
NA
HL_7S1H_0691/I/1492:1498Pseudoknot geometry with 3' bulge
homologous
HL_5J7L_170
NA
HL_7S1H_0711/I/1565:1568No text annotation
homologous
HL_7RQB_039
NA
HL_7S1H_0721/I/1612:1619No text annotation
homologous
HL_5J7L_173
NA
HL_7S1H_0731/I/1630:1636GNRA
homologous
HL_5J7L_174
NA
HL_7S1H_0741/I/1691:1696No text annotation
geometric
HL_7RQB_042
NA
HL_7S1H_0751/I/1728:1731No text annotation
homologous
HL_5J7L_176
NA
HL_7S1H_0761/I/1752:1756No text annotation
homologous
HL_7RQB_044
NA
HL_7S1H_0771/I/1777:1787No text annotation
homologous
HL_5J7L_178
NA
HL_7S1H_0781/I/1806:1811GNRA related
homologous
HL_5J7L_179
NA
HL_7S1H_0791/I/1868:1873GNRA variation
homologous
HL_5J7L_180
NA
HL_7S1H_0801/I/1910:1920No text annotation
homologous
HL_5J7L_181
NA
HL_7S1H_0811/I/1949:1957No text annotation
homologous
HL_7RQB_049
NA
HL_7S1H_0821/I/2027:2036No text annotation
homologous
HL_5J7L_183
NA
HL_7S1H_0841/I/2209:2215No text annotation
homologous
HL_5J7L_185
NA
HL_7S1H_0851/I/2248:2256No text annotation
homologous
HL_7RQB_053
NA
HL_7S1H_0861/I/2264:2276No text annotation
homologous
HL_7RQB_054
NA
HL_7S1H_1081/I/2304:2312No text annotation
homologous
HL_9DFE_198
HL_02452.1
HL_7S1H_0881/I/2324:2331Pseudoknot geometry
homologous
HL_5J7L_189
NA
HL_7S1H_0891/I/2356:2361GNRA
homologous
HL_5J7L_190
NA
HL_7S1H_0901/I/2374:2379GNRA
homologous
HL_5J7L_191
NA
HL_7S1H_0911/I/2404:2413No text annotation
homologous
HL_5J7L_192
NA
HL_7S1H_0921/I/2471:2479No text annotation
homologous
HL_4WF9_056
HL_52011.1
HL_7S1H_0931/I/2528:2535GNRA variation
homologous
HL_5J7L_194
NA
HL_7S1H_0941/I/2551:2557No text annotation
homologous
HL_5J7L_195
NA
HL_7S1H_0951/I/2594:2599GNRA
homologous
HL_7RQB_063
NA
HL_7S1H_0961/I/2658:2663GNRA
geometric
HL_7RQB_064
NA
HL_7S1H_0971/I/2701:2706Ribsomal LSU H95
homologous
HL_5J7L_198
NA
HL_7S1H_0981/I/2745:2759No text annotation
homologous
HL_5J7L_199
NA
HL_7S1H_1091/I/2796:2799Mini UNCG
geometric
HL_5F9R_002
HL_90436.1
HL_7S1H_1001/I/2819:2827No text annotation
homologous
HL_5J7L_201
NA
HL_7S1H_1011/I/2856:2861GNRA
homologous
HL_5J7L_202
NA
HL_7S1H_1101/J/34:48No text annotation
homologous
HL_9DFE_067
HL_97756.3
HL_7S1H_1021/J/38:44No text annotation
homologous
HL_7RQB_070
NA
HL_7S1H_1031/J/86:90Mini UNCG
homologous
HL_5J7L_204
NA

Problematic loops

#loop idProblemSequence
HL_7S1H_002No text annotation
HL_7S1H_005No text annotation
HL_7S1H_018No text annotation
HL_7S1H_023No text annotation
HL_7S1H_057No text annotation
HL_7S1H_058No text annotation
HL_7S1H_060No text annotation
HL_7S1H_105No text annotation
HL_7S1H_061No text annotation
HL_7S1H_062No text annotation
HL_7S1H_106No text annotation
HL_7S1H_070UNCG
HL_7S1H_083No text annotation
HL_7S1H_087No text annotation
HL_7S1H_099UNCG variation
HL_7S1H_107No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_7S1H_0011/C/30:32,
1/C/552:553		Single bulged G
homologous
IL_4LFB_001
IL_28408.1
IL_7S1H_0021/C/44:45,
1/C/396:398		Single bulged A
homologous
IL_5J7L_002
NA
IL_7S1H_0031/C/47:52,
1/C/359:361		No text annotation
geometric
IL_5J7L_003
NA
IL_7S1H_0041/C/54:56,
1/C/356:357		Minor groove platform
homologous
IL_4LFB_004
IL_34520.1
IL_7S1H_0051/C/63:66,
1/C/103:104		Multiple bulged bases
homologous
IL_4LFB_005
IL_71421.1
IL_7S1H_0061/C/67:69,
1/C/99:102		Minor groove platform with extra cWW
homologous
IL_5J7L_006
NA
IL_7S1H_0071/C/70:73,
1/C/97:98		Minor groove platform
homologous
IL_5J7L_007
NA
IL_7S1H_0081/C/75:76,
1/C/93:95		Major groove intercalation
geometric
IL_5J7L_352
NA
IL_7S1H_0091/C/128:131,
1/C/231:233		Isolated non-canonical cWW pair
homologous
IL_5J7L_009
NA
IL_7S1H_0101/C/132:136,
1/C/227:230		Minor groove platform related
homologous
IL_5J7L_010
NA
IL_7S1H_0111/C/144:146,
1/C/176:178		Isolated cWH basepair
homologous
IL_5J7L_011
NA
IL_7S1H_0121/C/147:153,
1/C/168:175		tWH-tWH-tHW-tHW
homologous
IL_5J7L_012
NA
IL_7S1H_0131/C/203:206,
1/C/213:214		No text annotation
IL_7S1H_0151/C/242:247,
1/C/277:284		Kink-turn with non-sequential stacking
homologous
IL_5J7L_014
NA
IL_7S1H_0161/C/249:252,
1/C/274:275		No text annotation
homologous
IL_4LFB_012
IL_22002.1
IL_7S1H_0171/C/292:293,
1/C/304:308		C-loop
homologous
IL_4LFB_013
IL_06671.1
IL_7S1H_0181/C/367:369,
1/C/392:393		Single bulged U
geometric
IL_5J7L_017
NA
IL_7S1H_0191/C/371:375,
1/C/389:390		C-loop
geometric
IL_5J7L_018
NA
IL_7S1H_0201/C/375:376,
1/C/387:389		Single bulged G
homologous
IL_5J7L_019
NA
IL_7S1H_0211/C/409:416,
1/C/427:433		No text annotation
homologous
IL_5J7L_020
NA
IL_7S1H_0221/C/440:442,
1/C/492:497		No text annotation
homologous
IL_5J7L_021
NA
IL_7S1H_0231/C/446:450,
1/C/483:488		tSH-tHW-tWW
homologous
IL_5J7L_022
NA
IL_7S1H_0241/C/450:455,
1/C/477:483		No text annotation
geometric
IL_5J7L_023
NA
IL_7S1H_0251/C/504:511,
1/C/540:541		SSU/LSU pseudoknot
homologous
IL_5J7L_024
NA
IL_7S1H_0261/C/515:521,
1/C/528:536		Kink-turn related
geometric
IL_4V88_415
NA
IL_7S1H_0271/C/569:575,
1/C/880:881		No text annotation
homologous
IL_4LFB_022
IL_20847.1
IL_7S1H_0281/C/580:584,
1/C/757:761		tSH-tHW-tHS
homologous
IL_5J7L_027
NA
IL_7S1H_0291/C/594:596,
1/C/644:645		Major groove platform
homologous
IL_5J7L_028
NA
IL_7S1H_0301/C/597:598,
1/C/640:643		Major groove minor groove platform; mini C-loop
homologous
IL_4LFB_025
IL_73108.1
IL_7S1H_0311/C/605:612,
1/C/628:633		No text annotation
homologous
IL_5J7L_030
NA
IL_7S1H_0321/C/654:655,
1/C/751:754		Major groove platform; stack outside cWW
homologous
IL_4LFB_027
IL_74641.1
IL_7S1H_0331/C/659:660,
1/C/745:747		Single stack bend
homologous
IL_5J7L_032
NA
IL_7S1H_0341/C/662:666,
1/C/740:743		Tandem non-canonical cWW pairs
homologous
IL_5J7L_033
NA
IL_7S1H_1851/C/673:677,
1/C/713:717		Triple non-canonical cWW pairs
homologous
IL_5J7L_361
NA
IL_7S1H_0361/C/684:688,
1/C/699:706		Kink-turn
homologous
IL_5J7L_035
NA
IL_7S1H_0371/C/774:778,
1/C/804:805		Left turn
homologous
IL_4LFB_032
IL_29346.3
IL_7S1H_0381/C/779:783,
1/C/799:803		tSH-tHW-tHS
homologous
IL_5J7L_037
NA
IL_7S1H_0401/C/887:894,
1/C/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_5J7L_038
NA
IL_7S1H_0411/C/922:923,
1/C/1393:1395		Single bulged A
homologous
IL_5J7L_039
NA
IL_7S1H_0421/C/925:927,
1/C/1390:1391		Single bulged G
homologous
IL_5J7L_040
NA
IL_7S1H_0431/C/933:935,
1/C/1380:1384		Minor groove platform
homologous
IL_5J7L_041
NA
IL_7S1H_0441/C/953:954,
1/C/1226:1228		No text annotation
homologous
IL_6CZR_150
NA
IL_7S1H_0451/C/993:997,
1/C/1044:1045		Minor groove platform
geometric
IL_5J7L_043
NA
IL_7S1H_0461/C/998:999,
1/C/1041:1043		Single stack bend
homologous
IL_5J7L_044
NA
IL_7S1H_0471/C/1048:1050,
1/C/1208:1209		Single bulged U
homologous
IL_5J7L_046
NA
IL_7S1H_0481/C/1052:1056,
1/C/1204:1206		Isolated cWS basepair
homologous
IL_4LFB_044
IL_82453.1
IL_7S1H_0491/C/1057:1058,
1/C/1199:1203		Minor groove platform
homologous
IL_4LFB_045
IL_24264.1
IL_7S1H_0501/C/1060:1061,
1/C/1195:1197		Single bulged A
geometric
IL_5J7L_049
NA
IL_7S1H_0511/C/1061:1063,
1/C/1193:1195		Isolated non-canonical cWW pair
geometric
IL_4LFB_047
IL_68118.1
IL_7S1H_0521/C/1124:1128,
1/C/1144:1149		No text annotation
homologous
IL_5J7L_051
NA
IL_7S1H_0531/C/1129:1132,
1/C/1142:1143		Minor groove platform
homologous
IL_5J7L_052
NA
IL_7S1H_0541/C/1158:1161,
1/C/1175:1181		No text annotation
geometric
IL_4LFB_050
IL_32376.1
IL_7S1H_1871/C/1247:1253,
1/C/1284:1290		No text annotation
homologous
IL_5J7L_054
NA
IL_7S1H_0561/C/1255:1258,
1/C/1277:1282		180 degree turn
homologous
IL_4LFB_052
IL_08849.1
IL_7S1H_0571/C/1259:1263,
1/C/1272:1276		Double sheared with non-canonical cWW
homologous
IL_5J7L_056
NA
IL_7S1H_0581/C/1303:1308,
1/C/1329:1334		No text annotation
geometric
IL_5J7L_057
NA
IL_7S1H_0591/C/1399:1401,
1/C/1501:1504		No text annotation
homologous
IL_5J7L_058
NA
IL_7S1H_0601/C/1401:1404,
1/C/1497:1501		No text annotation
geometric
IL_4V88_464
NA
IL_7S1H_0611/C/1405:1407,
1/C/1494:1496		Isolated non-canonical cWW pair
geometric
IL_5MWI_007
NA
IL_7S1H_0621/C/1407:1409,
1/C/1491:1494		Isolated non-canonical cWW pair
homologous
IL_5J7L_363
NA
IL_7S1H_0631/C/1412:1414,
1/C/1486:1488		Isolated non-canonical cWW pair
homologous
IL_5J7L_061
NA
IL_7S1H_0641/C/1416:1419,
1/C/1481:1484		Double sheared
homologous
IL_5J7L_062
NA
IL_7S1H_0651/C/1430:1435,
1/C/1466:1470		Triple sheared related
homologous
IL_5J7L_063
NA
IL_7S1H_0661/C/1440:1442,
1/C/1460:1461		Single bulged A
homologous
IL_5J7L_064
NA
IL_7S1H_0671/C/1445:1448,
1/C/1455:1457		No text annotation
homologous
IL_5J7L_065
NA
IL_7S1H_0681/I/24:30,
1/I/510:516		Triple sheared with non-canonical cWW
geometric
IL_5J7L_245
NA
IL_7S1H_0691/I/36:37,
1/I/442:444		Single bulged A
homologous
IL_7RQB_002
NA
IL_7S1H_0701/I/43:44,
1/I/434:436		Minor groove platform
homologous
IL_5J7L_247
NA
IL_7S1H_0711/I/81:85,
1/I/97:105		No text annotation
homologous
IL_5J7L_248
NA
IL_7S1H_0721/I/183:184,
1/I/212:214		Single stack bend
homologous
IL_5J7L_249
NA
IL_7S1H_0731/I/188:194,
1/I/201:208		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_250
NA
IL_7S1H_0741/I/239:245,
1/I/253:258		7x6 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_251
NA
IL_7S1H_0751/I/269:271,
1/I/366:370		No text annotation
homologous
IL_5J7L_252
NA
IL_7S1H_0761/I/274:281,
1/I/359:363		No text annotation
homologous
IL_5J7L_253
NA
IL_7S1H_0771/I/293:295,
1/I/343:347		No text annotation
homologous
IL_5J7L_254
NA
IL_7S1H_0781/I/481:484,
1/I/496:509		No text annotation
geometric
IL_5J7L_255
NA
IL_7S1H_0791/I/536:539,
1/I/554:557		Double sheared
homologous
IL_5J7L_256
NA
IL_7S1H_0801/I/564:566,
1/I/575:577		Isolated non-canonical cWW pair
geometric
IL_5J7L_257
NA
IL_7S1H_0811/I/606:610,
1/I/618:622		AAA cross-strand stack
homologous
IL_5J7L_258
NA
IL_7S1H_0821/I/672:674,
1/I/806:808		No text annotation
geometric
IL_7RQB_017
NA
IL_7S1H_0831/I/674:678,
1/I/799:806		tHW-tHW cross-strand stack
homologous
IL_5J7L_260
NA
IL_7S1H_0841/I/697:698,
1/I/763:765		Single bulged A
geometric
IL_5J7L_261
NA
IL_7S1H_0851/I/702:703,
1/I/728:730		Single bulged G
geometric
IL_5J7L_262
NA
IL_7S1H_0861/I/703:707,
1/I/724:728		Triple sheared
homologous
IL_4WF9_024
IL_15190.1
IL_7S1H_0871/I/738:740,
1/I/757:758		Major groove platform
homologous
IL_5J7L_264
NA
IL_7S1H_0881/I/775:777,
1/I/787:791		Multiple bulged bases
geometric
IL_4V9F_030
IL_57881.1
IL_7S1H_0891/I/837:838,
1/I/940:942		Single stack bend
homologous
IL_5J7L_266
NA
IL_7S1H_0901/I/844:847,
1/I/933:934		90 degree turn
geometric
IL_5J7L_267
NA
IL_7S1H_1881/I/844:848,
1/I/930:934		No text annotation
geometric
IL_5J7L_399
NA
IL_7S1H_0911/I/847:848,
1/I/930:933		Stack outside cWW
homologous
IL_5J7L_268
NA
IL_7S1H_0921/I/850:851,
1/I/926:928		Single stack bend
homologous
IL_5J7L_269
NA
IL_7S1H_0931/I/856:862,
1/I/915:921		7x7 Sarcin-Ricin with intercalated A; G-bulge
geometric
IL_5J7L_270
NA
IL_7S1H_0941/I/862:863,
1/I/913:915		Single bulged G
homologous
IL_5J7L_271
NA
IL_7S1H_0951/I/864:868,
1/I/909:912		C-loop with bulged stacked A's
homologous
IL_5J7L_272
NA
IL_7S1H_0961/I/870:872,
1/I/905:907		Isolated non-canonical cWW pair
homologous
IL_5J7L_273
NA
IL_7S1H_0971/I/875:879,
1/I/898:902		Double sheared with non-canonical cWW
homologous
IL_5J7L_274
NA
IL_7S1H_0991/I/994:996,
1/I/1159:1160		Single bulged C
homologous
IL_5J7L_276
NA
IL_7S1H_1001/I/998:1002,
1/I/1153:1157		UAA/GAN
homologous
IL_4WF9_036
IL_08938.1
IL_7S1H_1011/I/1004:1011,
1/I/1150:1151		SSU/LSU pseudoknot
geometric
IL_5J7L_278
NA
IL_7S1H_1021/I/1011:1013,
1/I/1149:1150		Single bulged U
homologous
IL_5J7L_279
NA
IL_7S1H_1031/I/1018:1024,
1/I/1140:1144		Kink-turn related
geometric
IL_5J7L_280
NA
IL_7S1H_1041/I/1024:1030,
1/I/1124:1140		No text annotation
geometric
IL_5J7L_281
NA
IL_7S1H_1051/I/1031:1034,
1/I/1121:1123		Isolated non-canonical cWW pair
homologous
IL_5J7L_282
NA
IL_7S1H_1061/I/1038:1041,
1/I/1114:1117		Tandem non-canonical cWW pairs
homologous
IL_5J7L_283
NA
IL_7S1H_1071/I/1043:1051,
1/I/1108:1112		Kink-turn
homologous
IL_5J7L_284
NA
IL_7S1H_1111/I/1196:1198,
1/I/1247:1250		Isolated cWS basepair
homologous
IL_5J7L_286
NA
IL_7S1H_1121/I/1202:1206,
1/I/1240:1243		No text annotation
homologous
IL_5J7L_287
NA
IL_7S1H_1131/I/1208:1215,
1/I/1234:1238		Kink-turn
homologous
IL_5J7L_288
NA
IL_7S1H_1141/I/1262:1269,
1/I/2011:2017		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_289
NA
IL_7S1H_1151/I/1310:1313,
1/I/1603:1604		Major groove platform; stack outside cWW
homologous
IL_5J7L_290
NA
IL_7S1H_1161/I/1319:1323,
1/I/1331:1333		C-loop
homologous
IL_5J7L_291
NA
IL_7S1H_1171/I/1351:1355,
1/I/1376:1380		UAA/GAN
homologous
IL_5J7L_292
NA
IL_7S1H_1181/I/1357:1361,
1/I/1370:1374		tSH-tHW-tHS
homologous
IL_5J7L_293
NA
IL_7S1H_1191/I/1415:1416,
1/I/1582:1587		No text annotation
homologous
IL_5J7L_294
NA
IL_7S1H_1201/I/1417:1421,
1/I/1577:1581		UAA/GAN
homologous
IL_5J7L_295
NA
IL_7S1H_1211/I/1432:1435,
1/I/1557:1561		Tandem non-canonical cWW pairs
homologous
IL_5J7L_296
NA
IL_7S1H_1221/I/1437:1440,
1/I/1551:1555		tSH-tHW
homologous
IL_5J7L_297
NA
IL_7S1H_1231/I/1450:1451,
1/I/1459:1461		Single bulged U
geometric
IL_5J7L_298
NA
IL_7S1H_1241/I/1468:1471,
1/I/1520:1524		No text annotation
homologous
IL_5J7L_299
NA
IL_7S1H_1251/I/1474:1478,
1/I/1513:1517		tSH-tHW-tHS
homologous
IL_5J7L_300
NA
IL_7S1H_1261/I/1481:1482,
1/I/1507:1510		180 degree turn
homologous
IL_5J7L_301
NA
IL_7S1H_1271/I/1489:1491,
1/I/1499:1500		Single bulged A
homologous
IL_5J7L_302
NA
IL_7S1H_1891/I/1526:1529,
1/I/1542:1546		UAA/GAN variation
homologous
IL_5J7L_303
NA
IL_7S1H_1291/I/1651:1656,
1/I/2004:2006		No text annotation
homologous
IL_5J7L_304
NA
IL_7S1H_1301/I/1663:1665,
1/I/1995:1997		Isolated tWW turn
homologous
IL_4WF9_063
IL_10432.1
IL_7S1H_1311/I/1666:1669,
1/I/1993:1994		Major groove platform; stack outside cWW
geometric
IL_7RQB_066
NA
IL_7S1H_1901/I/1666:1674,
1/I/1990:1994		No text annotation
homologous
IL_5J7L_386
NA
IL_7S1H_1321/I/1669:1674,
1/I/1990:1993		Intercalated tWH
homologous
IL_5J7L_307
NA
IL_7S1H_1331/I/1686:1691,
1/I/1696:1702		tSH-tSH-tHH-tHS
homologous
IL_5J7L_308
NA
IL_7S1H_1341/I/1712:1718,
1/I/1742:1746		6x5 Sarcin-Ricin; G-bulge
homologous
IL_5J7L_309
NA
IL_7S1H_1351/I/1720:1724,
1/I/1736:1740		Triple sheared
homologous
IL_5J7L_310
NA
IL_7S1H_1361/I/1727:1728,
1/I/1731:1733		Single bulged C
homologous
IL_5J7L_311
NA
IL_7S1H_1371/I/1770:1771,
1/I/1980:1982		Single bulged A
homologous
IL_5J7L_312
NA
IL_7S1H_1381/I/1798:1804,
1/I/1813:1821		Kink-turn related
homologous
IL_5J7L_313
NA
IL_7S1H_1391/I/1837:1840,
1/I/1902:1903		Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
NA
IL_7S1H_1401/I/1841:1842,
1/I/1898:1901		Major groove intercalation
homologous
IL_5J7L_315
NA
IL_7S1H_1411/I/1846:1849,
1/I/1893:1894		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_316
NA
IL_7S1H_1911/I/1851:1860,
1/I/1882:1891		No text annotation
homologous
IL_5J7L_387
NA
IL_7S1H_1421/I/1864:1867,
1/I/1874:1878		UAA/GAN related
homologous
IL_5J7L_317
NA
IL_7S1H_1431/I/1933:1934,
1/I/1964:1967		Bulged stacked bases
homologous
IL_7RQB_076
NA
IL_7S1H_1441/I/1934:1945,
1/I/1961:1964		No text annotation
geometric
IL_7A0S_072
IL_04332.3
IL_7S1H_1451/I/2050:2052,
1/I/2617:2618		Major groove platform
homologous
IL_5J7L_320
NA
IL_7S1H_1461/I/2054:2056,
1/I/2612:2615		No text annotation
homologous
IL_5J7L_321
NA
IL_7S1H_1921/I/2067:2069,
1/I/2442:2443		Single bulged U
homologous
IL_7A0S_075
IL_97561.1
IL_7S1H_1491/I/2070:2071,
1/I/2438:2441		Minor groove platform
homologous
IL_7RQB_081
NA
IL_7S1H_1501/I/2081:2083,
1/I/2236:2239		Isolated tHS basepair with bulges
homologous
IL_5J7L_325
NA
IL_7S1H_1511/I/2085:2087,
1/I/2232:2234		Isolated non-canonical cWW pair
homologous
IL_5J7L_326
NA
IL_7S1H_1571/I/2202:2204,
1/I/2220:2221		Single bulged U
homologous
IL_5J7L_331
NA
IL_7S1H_1581/I/2350:2353,
1/I/2364:2367		Double sheared
homologous
IL_5J7L_333
NA
IL_7S1H_1591/I/2400:2403,
1/I/2414:2416		Decoding loop related
geometric
IL_3C3Z_002
IL_29925.1
IL_7S1H_1951/I/2453:2454,
1/I/2498:2500		Single stack bend
homologous
IL_5J7L_391
NA
IL_7S1H_1961/I/2454:2455,
1/I/2496:2498		Major groove platform
homologous
IL_5J7L_392
NA
IL_7S1H_1971/I/2457:2459,
1/I/2493:2494		Major groove platform
homologous
IL_5J7L_393
NA
IL_7S1H_1621/I/2459:2461,
1/I/2489:2493		Major groove minor groove platform with extra cWW
geometric
IL_5J7L_337
NA
IL_7S1H_1631/I/2466:2470,
1/I/2480:2484		Double sheared with non-canonical cWW
homologous
IL_7A0S_087
IL_87767.1
IL_7S1H_1981/I/2507:2508,
1/I/2580:2582		Major groove platform
homologous
IL_5J7L_394
NA
IL_7S1H_1651/I/2510:2512,
1/I/2574:2578		Isolated non-canonical cWW with bulges
homologous
IL_5J7L_340
NA
IL_7S1H_1661/I/2512:2513,
1/I/2571:2574		No text annotation
geometric
IL_5J7L_341
NA
IL_7S1H_1671/I/2522:2523,
1/I/2540:2543		Major groove platform with intercalation
homologous
IL_5J7L_342
NA
IL_7S1H_1691/I/2591:2592,
1/I/2601:2603		Single bulged A
homologous
IL_7RQB_101
NA
IL_7S1H_1701/I/2636:2640,
1/I/2774:2782		tSH-tHS-tHW
homologous
IL_5J7L_345
NA
IL_7S1H_1711/I/2652:2658,
1/I/2663:2668		Sarcin-Ricin target in LSU H95; G-bulge
homologous
IL_7A0S_094
IL_16458.5
IL_7S1H_1721/I/2680:2684,
1/I/2725:2727		C-loop
homologous
IL_5J7L_347
NA
IL_7S1H_1731/I/2687:2691,
1/I/2718:2722		UAA/GAN related, with intercalation
homologous
IL_5J7L_348
NA
IL_7S1H_1741/I/2695:2696,
1/I/2711:2714		Multiple bulged bases
homologous
IL_5J7L_349
NA
IL_7S1H_1751/I/2737:2742,
1/I/2762:2767		UAA/GAN with extra cWW
homologous
IL_5J7L_350
NA
IL_7S1H_2011/I/2795:2796,
1/I/2799:2801		Single bulged A
geometric
IL_4WF9_022
IL_14190.1
IL_7S1H_1761/I/2806:2811,
1/I/2889:2892		No text annotation
homologous
IL_5J7L_351
NA
IL_7S1H_1771/I/2838:2839,
1/I/2878:2880		Major groove intercalation
homologous
IL_5J7L_352
NA
IL_7S1H_1781/I/2843:2846,
1/I/2870:2874		Multiple bulged bases with non-canonical cWW
homologous
IL_5J7L_353
NA
IL_7S1H_1791/I/2847:2852,
1/I/2865:2869		tHS double platform
homologous
IL_5J7L_354
NA
IL_7S1H_1801/J/17:18,
1/J/65:67		Major groove intercalation
homologous
IL_5J7L_355
NA
IL_7S1H_1811/J/23:28,
1/J/56:60		No text annotation
homologous
IL_5J7L_356
NA
IL_7S1H_1821/J/30:31,
1/J/51:54		Major groove minor groove platform; mini C-loop
homologous
IL_5J7L_357
NA
IL_7S1H_1831/J/34:38,
1/J/44:48		Symmetric double minor groove platform
geometric
IL_7RQB_114
NA
IL_7S1H_1841/J/71:79,
1/J/97:105		Bacterial 5S Loop E
homologous
IL_5J7L_359
NA

Problematic loops

#loop idProblemSequence
IL_7S1H_014No text annotation
IL_7S1H_035No text annotation
IL_7S1H_039No text annotation
IL_7S1H_186No text annotation
IL_7S1H_055No text annotation
IL_7S1H_098Major groove platform with extra cWW
IL_7S1H_108No text annotation
IL_7S1H_109Major groove platform with extra cWW
IL_7S1H_110No text annotation
IL_7S1H_128Triple sheared related
IL_7S1H_147No text annotation
IL_7S1H_148Isolated non-canonical cWW pair
IL_7S1H_152No text annotation
IL_7S1H_153Multiple bulged bases
IL_7S1H_193No text annotation
IL_7S1H_154No text annotation
IL_7S1H_155No text annotation
IL_7S1H_200Kink-turn
IL_7S1H_194No text annotation
IL_7S1H_156Isolated non-canonical cWW pair
IL_7S1H_160No text annotation
IL_7S1H_161No text annotation
IL_7S1H_164No text annotation
IL_7S1H_168No text annotation
IL_7S1H_199No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_7S1H_0011/C/46:47,
1/C/361:367,
1/C/393:395		No text annotation
homologous
J3_5J7L_001
NA
J3_7S1H_0281/C/46:52,
1/C/359:367,
1/C/393:395		No text annotation
homologous
J3_5J7L_050
NA
J3_7S1H_0021/C/586:588,
1/C/651:654,
1/C/754:755		No text annotation
homologous
J3_5J7L_002
NA
J3_7S1H_0291/C/586:588,
1/C/651:655,
1/C/751:755		No text annotation
homologous
J3_5J7L_051
NA
J3_7S1H_0031/C/672:673,
1/C/717:725,
1/C/732:734		No text annotation
homologous
J3_5J7L_003
NA
J3_7S1H_0041/C/826:829,
1/C/857:861,
1/C/868:874		No text annotation
homologous
J3_5J7L_004
NA
J3_7S1H_0051/C/936:939,
1/C/1344:1350,
1/C/1372:1379		No text annotation
homologous
J3_4LFB_002
J3_85722.1
J3_7S1H_0061/C/943:946,
1/C/1235:1237,
1/C/1337:1340		No text annotation
homologous
J3_4LFB_003
J3_44359.1
J3_7S1H_0071/C/955:962,
1/C/973:984,
1/C/1221:1225		No text annotation
homologous
J3_5J7L_006
NA
J3_7S1H_0081/C/990:993,
1/C/1045:1047,
1/C/1210:1215		No text annotation
homologous
J3_4LFB_005
J3_84394.1
J3_7S1H_0301/C/990:997,
1/C/1044:1047,
1/C/1210:1215		No text annotation
homologous
J3_5J7L_053
NA
J3_7S1H_0101/C/1063:1068,
1/C/1107:1113,
1/C/1187:1193		No text annotation
homologous
J3_5J7L_008
NA
J3_7S1H_0311/C/1073:1074,
1/C/1083:1086,
1/C/1099:1102		No text annotation
homologous
J3_4LFB_017
J3_11018.1
J3_7S1H_0121/C/1116:1118,
1/C/1155:1158,
1/C/1181:1184		No text annotation
homologous
J3_5J7L_010
NA
J3_7S1H_0321/C/1116:1118,
1/C/1155:1161,
1/C/1175:1184		No text annotation
homologous
J3_4LFB_018
J3_40706.1
J3_7S1H_0131/C/1237:1241,
1/C/1296:1303,
1/C/1334:1337		No text annotation
homologous
J3_4LFB_009
J3_03192.1
J3_7S1H_0141/I/30:31,
1/I/474:481,
1/I/509:510		No text annotation
homologous
J3_7RQB_001
NA
J3_7S1H_0331/I/30:31,
1/I/474:484,
1/I/496:510		No text annotation
homologous
J3_5J7L_066
NA
J3_7S1H_0341/I/32:35,
1/I/445:461,
1/I/468:473		No text annotation
homologous
J3_5J7L_067
NA
J3_7S1H_0151/I/56:57,
1/I/70:76,
1/I/110:114		No text annotation
homologous
J3_5J7L_037
NA
J3_7S1H_0351/I/297:301,
1/I/316:325,
1/I/337:341		No text annotation
homologous
J3_5J7L_068
NA
J3_7S1H_0161/I/683:689,
1/I/773:775,
1/I/791:794		No text annotation
homologous
J3_5J7L_038
NA
J3_7S1H_0171/I/698:700,
1/I/732:736,
1/I/760:763		No text annotation
homologous
J3_7RQB_005
NA
J3_7S1H_0181/I/1055:1057,
1/I/1081:1087,
1/I/1102:1104		No text annotation
homologous
J3_6PRV_001
J3_37832.1
J3_7S1H_0391/I/1055:1057,
1/I/1081:1091,
1/I/1100:1104		No text annotation
J3_7S1H_0191/I/1298:1303,
1/I/1625:1627,
1/I/1639:1642		No text annotation
homologous
J3_5J7L_041
NA
J3_7S1H_0201/I/1306:1309,
1/I/1605:1611,
1/I/1620:1622		No text annotation
homologous
J3_7A0S_007
J3_47341.1
J3_7S1H_0211/I/1344:1349,
1/I/1382:1385,
1/I/1402:1403		No text annotation
homologous
J3_5J7L_043
NA
J3_7S1H_0371/I/1424:1429,
1/I/1564:1565,
1/I/1568:1574		No text annotation
homologous
J3_5J7L_069
NA
J3_7S1H_0221/I/2091:2093,
1/I/2196:2200,
1/I/2223:2228		Kink-turn 3-way junction
homologous
J3_5J7L_044
NA
J3_7S1H_0381/I/2282:2284,
1/I/2384:2395,
1/I/2421:2427		No text annotation
homologous
J3_5J7L_070
NA
J3_7S1H_0231/I/2295:2299,
1/I/2317:2323,
1/I/2332:2337		No text annotation
J3_7S1H_0241/I/2517:2520,
1/I/2545:2547,
1/I/2561:2567		No text annotation
homologous
J3_5J7L_046
NA
J3_7S1H_0251/I/2789:2791,
1/I/2805:2806,
1/I/2892:2894		No text annotation
homologous
J3_5J7L_047
NA
J3_7S1H_0261/I/2812:2815,
1/I/2831:2836,
1/I/2882:2888		No text annotation
homologous
J3_5J7L_048
NA
J3_7S1H_0271/J/10:16,
1/J/68:70,
1/J/106:110		No text annotation
homologous
J3_5J7L_049
NA
J4_7S1H_0011/C/115:122,
1/C/239:240,
1/C/286:289,
1/C/311:312		No text annotation
homologous
J4_5J7L_001
NA
J4_7S1H_0021/C/142:144,
1/C/178:184,
1/C/193:198,
1/C/219:221		No text annotation
homologous
J4_5J7L_002
NA
J4_7S1H_0031/C/575:577,
1/C/764:769,
1/C/810:821,
1/C/879:880		No text annotation
homologous
J4_5J7L_003
NA
J4_7S1H_0041/I/268:269,
1/I/370:375,
1/I/399:406,
1/I/421:424		No text annotation
homologous
J4_5J7L_018
NA
J4_7S1H_0051/I/297:301,
1/I/316:319,
1/I/323:325,
1/I/337:341		No text annotation
homologous
J4_5J7L_019
NA
J4_7S1H_0061/I/601:604,
1/I/624:628,
1/I/635:638,
1/I/650:656		No text annotation
homologous
J4_5J7L_020
NA
J4_7S1H_0071/I/1270:1276,
1/I/1294:1295,
1/I/1645:1648,
1/I/2009:2010		No text annotation
homologous
J4_5J7L_021
NA
J4_7S1H_0081/I/1310:1314,
1/I/1338:1343,
1/I/1404:1405,
1/I/1597:1604		No text annotation
homologous
J4_5J7L_022
NA
J4_7S1H_0091/I/1313:1314,
1/I/1338:1343,
1/I/1404:1405,
1/I/1597:1603		No text annotation
homologous
J4_5J7L_023
NA
J4_7S1H_0101/I/1444:1445,
1/I/1466:1467,
1/I/1525:1526,
1/I/1546:1547		No text annotation
homologous
J4_5J7L_024
NA
J4_7S1H_0111/I/1772:1776,
1/I/1788:1792,
1/I/1827:1830,
1/I/1975:1979		No text annotation
homologous
J4_5J7L_025
NA
J4_7S1H_0121/I/1833:1835,
1/I/1905:1906,
1/I/1924:1933,
1/I/1967:1972		No text annotation
homologous
J4_9DFE_008
J4_42306.1
J4_7S1H_0131/I/2285:2289,
1/I/2343:2347,
1/I/2370:2372,
1/I/2381:2383		No text annotation
homologous
J4_5J7L_027
NA
J4_7S1H_0141/I/2643:2646,
1/I/2674:2676,
1/I/2731:2735,
1/I/2769:2771		No text annotation
homologous
J4_5J7L_028
NA
J5_7S1H_0011/C/36:39,
1/C/403:406,
1/C/436:440,
1/C/497:500,
1/C/545:548		No text annotation
homologous
J5_5J7L_001
NA
J5_7S1H_0021/C/36:39,
1/C/403:406,
1/C/436:442,
1/C/492:500,
1/C/545:548		No text annotation
homologous
J5_5J7L_002
NA
J5_7S1H_0031/C/58:61,
1/C/106:113,
1/C/314:316,
1/C/337:339,
1/C/350:354		No text annotation
homologous
J5_5J7L_003
NA
J5_7S1H_0041/I/47:54,
1/I/116:121,
1/I/130:131,
1/I/148:150,
1/I/176:178		No text annotation
homologous
J5_5J7L_013
NA
J5_7S1H_0051/I/531:533,
1/I/560:564,
1/I/577:579,
1/I/1261:1262,
1/I/2017:2018		No text annotation
homologous
J5_5J7L_014
NA
J5_7S1H_0061/I/584:589,
1/I/668:671,
1/I/809:812,
1/I/1195:1196,
1/I/1250:1256		No text annotation
homologous
J5_5J7L_015
NA
J5_7S1H_0071/I/1674:1682,
1/I/1706:1707,
1/I/1751:1752,
1/I/1756:1764,
1/I/1988:1990		No text annotation
homologous
J5_5J7L_016
NA
J5_7S1H_0081/I/2057:2064,
1/I/2446:2453,
1/I/2500:2506,
1/I/2583:2588,
1/I/2606:2611		No text annotation
J5_7S1H_0091/I/2074:2077,
1/I/2243:2246,
1/I/2258:2259,
1/I/2281:2282,
1/I/2427:2435		No text annotation
homologous
J5_4WF9_007
J5_39529.2
J6_7S1H_0011/I/45:46,
1/I/179:183,
1/I/214:224,
1/I/231:235,
1/I/262:266,
1/I/426:433		No text annotation
J6_7S1H_0021/I/2074:2077,
1/I/2243:2246,
1/I/2258:2259,
1/I/2281:2284,
1/I/2384:2395,
1/I/2421:2435		No text annotation
J7_7S1H_0011/I/8:15,
1/I/525:531,
1/I/2018:2023,
1/I/2040:2043,
1/I/2625:2630,
1/I/2788:2789,
1/I/2894:2895		No text annotation
J7_7S1H_0021/I/817:822,
1/I/835:838,
1/I/940:946,
1/I/971:976,
1/I/987:991,
1/I/1163:1164,
1/I/1185:1190		No text annotation

Problematic loops

#loop idProblemSequence
J3_7S1H_009No text annotation
J3_7S1H_011No text annotation
J3_7S1H_036No text annotation

Coloring options:
Copyright 2025 BGSU RNA group. Page generated in 0.0605 s