HL_7S1H_045

3D structure

PDB id

7S1H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic linezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

7S1H|1|I|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S1H_045 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0627

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

7S1H|1|I|G|410
7S1H|1|I|G|411
7S1H|1|I|A|412
7S1H|1|I|C|413
7S1H|1|I|C|414
7S1H|1|I|A|415
7S1H|1|I|U|416
7S1H|1|I|C|417

Current chains

Chain I

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L15