HL_7S1H_081

3D structure

PDB id

7S1H (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic linezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

7S1H|1|I|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S1H_081 not in the Motif Atlas

Homologous match to HL_7RQB_049

Geometric discrepancy: 0.0717

The information below is about HL_7RQB_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51824.1

Basepair signature

cWW-F-F-tSH-F-F

Number of instances in this motif group

8

Unit IDs

7S1H|1|I|G|1949
7S1H|1|I|G|1950
7S1H|1|I|U|1951
7S1H|1|I|A|1952
7S1H|1|I|A|1953
7S1H|1|I|G|1954
7S1H|1|I|U|1955
7S1H|1|I|U|1956
7S1H|1|I|C|1957

Current chains

Chain I

23S rRNA

Nearby chains

Chain C

Small subunit ribosomal RNA; SSU rRNA

Chain S

50S ribosomal protein L14