HL_7S1I_009

3D structure

PDB id

7S1I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GGUAACGGC

Length

9 nucleotides

Bulged bases

7S1I|1|C|G|266

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S1I_009 not in the Motif Atlas

Homologous match to HL_5J7L_006

Geometric discrepancy: 0.0677

The information below is about HL_5J7L_006

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

7S1I|1|C|G|259
7S1I|1|C|G|260
7S1I|1|C|U|261
7S1I|1|C|A|262
7S1I|1|C|A|263
7S1I|1|C|C|264
7S1I|1|C|G|265
7S1I|1|C|G|266
7S1I|1|C|C|267

Current chains

Chain C

16S rRNA

Nearby chains

Chain 2

30S ribosomal protein S20

Chain y

30S ribosomal protein S17