HL_7S1I_067

3D structure

PDB id

7S1I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S1I_067 not in the Motif Atlas

Homologous match to HL_5J7L_165

Geometric discrepancy: 0.0953

The information below is about HL_5J7L_165

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

7S1I|1|I|G|1281
7S1I|1|I|U|1282
7S1I|1|I|G|1283
7S1I|1|I|A|1284
7S1I|1|I|A|1285
7S1I|1|I|A|1286
7S1I|1|I|A|1287
7S1I|1|I|G|1288
7S1I|1|I|C|1289

Current chains

Chain I

23S rRNA

Nearby chains

Chain V

50S ribosomal protein L17

Chain a

50S ribosomal protein L22

Chain i

50S ribosomal protein L32