HL_7S1I_108

3D structure

PDB id

7S1I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.48 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

7S1I|1|I|U|958, 7S1I|1|I|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S1I_108 not in the Motif Atlas

Homologous match to HL_5J7L_211

Geometric discrepancy: 0.0827

The information below is about HL_5J7L_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7S1I|1|I|PSU|955
7S1I|1|I|G|956
7S1I|1|I|C|957
7S1I|1|I|U|958
7S1I|1|I|A|959
7S1I|1|I|A|960
7S1I|1|I|C|961
7S1I|1|I|G|962

Current chains

Chain I

23S rRNA

Nearby chains

Chain J

5S ribosomal RNA; 5S rRNA

Chain U

50S ribosomal protein L16