HL_7S1J_021

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GAUGCAACGC

Length

10 nucleotides

Bulged bases

7S1J|1|C|G|971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S1J_021 not in the Motif Atlas

Homologous match to HL_5J7L_021

Geometric discrepancy: 0.094

The information below is about HL_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50779.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7S1J|1|C|G|963
7S1J|1|C|A|964
7S1J|1|C|U|965
7S1J|1|C|G|966
7S1J|1|C|C|967
7S1J|1|C|A|968
7S1J|1|C|A|969
7S1J|1|C|C|970
7S1J|1|C|G|971
7S1J|1|C|C|972

Current chains

Chain C

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S9

Chain q

30S ribosomal protein S10

Chain u

30S ribosomal protein S13