3D structure

PDB id
7S1J (explore in PDB, NAKB, or RNA 3D Hub)
Description
Wild-type Escherichia coli ribosome with antibiotic radezolid
Experimental method
ELECTRON MICROSCOPY
Resolution
2.47 Å

Loop

Sequence
GAUGCAACGC
Length
10 nucleotides
Bulged bases
7S1J|1|C|G|971
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7S1J_021 not in the Motif Atlas
Homologous match to HL_5J7L_021
Geometric discrepancy: 0.094
The information below is about HL_5J7L_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_50779.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

7S1J|1|C|G|963
7S1J|1|C|A|964
7S1J|1|C|U|965
7S1J|1|C|G|966
7S1J|1|C|C|967
7S1J|1|C|A|968
7S1J|1|C|A|969
7S1J|1|C|C|970
7S1J|1|C|G|971
7S1J|1|C|C|972

Current chains

Chain C
16S rRNA

Nearby chains

Chain p
30S ribosomal protein S9
Chain q
30S ribosomal protein S10
Chain u
30S ribosomal protein S13

Coloring options:


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