HL_7S1J_063

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S1J_063 not in the Motif Atlas

Homologous match to HL_5J7L_164

Geometric discrepancy: 0.1075

The information below is about HL_5J7L_164

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

7S1J|1|I|U|1222
7S1J|1|I|G|1223
7S1J|1|I|U|1224
7S1J|1|I|G|1225
7S1J|1|I|A|1226
7S1J|1|I|G|1227

Current chains

Chain I

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L15

Chain Y

50S ribosomal protein L20

Chain Z

Ribosomal protein L21