HL_7S1J_098

3D structure

PDB id

7S1J (explore in PDB, NAKB, or RNA 3D Hub)

Description

Wild-type Escherichia coli ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

7S1J|1|I|G|2751, 7S1J|1|I|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S1J_098 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0758

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

7S1J|1|I|C|2745
7S1J|1|I|U|2746
7S1J|1|I|G|2747
7S1J|1|I|A|2748
7S1J|1|I|A|2749
7S1J|1|I|A|2750
7S1J|1|I|G|2751
7S1J|1|I|C|2752
7S1J|1|I|A|2753
7S1J|1|I|U|2754
7S1J|1|I|C|2755
7S1J|1|I|U|2756
7S1J|1|I|A|2757
7S1J|1|I|A|2758
7S1J|1|I|G|2759

Current chains

Chain I

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L6

Chain R

50S ribosomal protein L13

Chain m

50S ribosomal protein L36