3D structure

PDB id
7S1K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid
Experimental method
ELECTRON MICROSCOPY
Resolution
2.42 Å

Loop

Sequence
GGUAACGGC
Length
9 nucleotides
Bulged bases
7S1K|1|C|G|266
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7S1K_009 not in the Motif Atlas
Homologous match to HL_5J7L_006
Geometric discrepancy: 0.0774
The information below is about HL_5J7L_006
Detailed Annotation
GNRA related
Broad Annotation
GNRA related
Motif group
HL_84299.4
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
9

Unit IDs

7S1K|1|C|G|259
7S1K|1|C|G|260
7S1K|1|C|U|261
7S1K|1|C|A|262
7S1K|1|C|A|263
7S1K|1|C|C|264
7S1K|1|C|G|265
7S1K|1|C|G|266
7S1K|1|C|C|267

Current chains

Chain C
16S rRNA

Nearby chains

Chain 2
30S ribosomal protein S20
Chain y
30S ribosomal protein S17

Coloring options:


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