HL_7S1K_077

3D structure

PDB id

7S1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

7S1K|1|I|U|1693

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S1K_077 not in the Motif Atlas

Geometric match to HL_6QN3_003

Geometric discrepancy: 0.1498

The information below is about HL_6QN3_003

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

7S1K|1|I|C|1691
7S1K|1|I|U|1692
7S1K|1|I|U|1693
7S1K|1|I|C|1694
7S1K|1|I|G|1695
7S1K|1|I|G|1696

Current chains

Chain I

23S rRNA

Nearby chains

Chain C

Small subunit ribosomal RNA; SSU rRNA

Chain K

50S ribosomal protein L2