HL_7S1K_082

3D structure

PDB id

7S1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S1K_082 not in the Motif Atlas

Homologous match to HL_5J7L_180

Geometric discrepancy: 0.3857

The information below is about HL_5J7L_180

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7S1K|1|I|C|1868
7S1K|1|I|G|1869
7S1K|1|I|C|1870
7S1K|1|I|A|1871
7S1K|1|I|A|1872
7S1K|1|I|G|1873

Current chains

Chain I

23S rRNA

Nearby chains