3D structure

PDB id
7S1K (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid
Experimental method
ELECTRON MICROSCOPY
Resolution
2.42 Å

Loop

Sequence
G(PSU)AAC(3TD)A(PSU)AAC
Length
11 nucleotides
Bulged bases
7S1K|1|I|A|1913, 7S1K|1|I|C|1914
QA status
Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7S1K_083 not in the Motif Atlas
Homologous match to HL_5J7L_181
Geometric discrepancy: 0.2839
The information below is about HL_5J7L_181
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_25847.2
Basepair signature
cWW-F-cSH-tHW-F-F-F
Number of instances in this motif group
3

Unit IDs

7S1K|1|I|G|1910
7S1K|1|I|PSU|1911
7S1K|1|I|A|1912
7S1K|1|I|A|1913
7S1K|1|I|C|1914
7S1K|1|I|3TD|1915
7S1K|1|I|A|1916
7S1K|1|I|PSU|1917
7S1K|1|I|A|1918
7S1K|1|I|A|1919
7S1K|1|I|C|1920

Current chains

Chain I
23S rRNA

Nearby chains

Chain A
Transfer RNA; tRNA
Chain C
Small subunit ribosomal RNA; SSU rRNA
Chain t
30S ribosomal protein S12

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