HL_7S1K_108

3D structure

PDB id

7S1K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cfr-modified Escherichia coli stalled ribosome with antibiotic radezolid

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

GACACGUGGUAUC

Length

13 nucleotides

Bulged bases

7S1K|1|I|G|386

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S1K_108 not in the Motif Atlas

Homologous match to HL_4WF9_013

Geometric discrepancy: 0.2426

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

7S1K|1|I|G|381
7S1K|1|I|A|382
7S1K|1|I|C|383
7S1K|1|I|A|384
7S1K|1|I|C|385
7S1K|1|I|G|386
7S1K|1|I|U|387
7S1K|1|I|G|388
7S1K|1|I|G|389
7S1K|1|I|U|390
7S1K|1|I|A|391
7S1K|1|I|U|392
7S1K|1|I|C|393

Current chains

Chain I

23S rRNA

Nearby chains

Chain f

50S ribosomal protein L28