HL_7S9U_010

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

7S9U|1|A|A|355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S9U_010 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1514

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

21

Unit IDs

7S9U|1|A|C|349
7S9U|1|A|U|350
7S9U|1|A|G|351
7S9U|1|A|G|352
7S9U|1|A|A|353
7S9U|1|A|A|354
7S9U|1|A|A|355
7S9U|1|A|G|356

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain U

50S ribosomal protein L24