HL_7S9U_012

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUAACAGCC

Length

9 nucleotides

Bulged bases

7S9U|1|A|A|373, 7S9U|1|A|A|374, 7S9U|1|A|C|375

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S9U_012 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1249

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

7S9U|1|A|G|371
7S9U|1|A|U|372
7S9U|1|A|A|373
7S9U|1|A|A|374
7S9U|1|A|C|375
7S9U|1|A|A|376
7S9U|1|A|G|377
7S9U|1|A|C|378
7S9U|1|A|C|379

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24