HL_7S9U_070

3D structure

PDB id

7S9U (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR3C ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACUGGGGCGGU

Length

11 nucleotides

Bulged bases

7S9U|1|A|U|2278, 7S9U|1|A|G|2279

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7S9U_070 not in the Motif Atlas

Geometric match to HL_7KGA_001

Geometric discrepancy: 0.3913

The information below is about HL_7KGA_001

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_34245.2

Basepair signature

cWW-cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7S9U|1|A|A|2276
7S9U|1|A|C|2277
7S9U|1|A|U|2278
7S9U|1|A|G|2279
7S9U|1|A|G|2280
7S9U|1|A|G|2281
7S9U|1|A|G|2282
7S9U|1|A|C|2283
7S9U|1|A|G|2284
7S9U|1|A|G|2285
7S9U|1|A|U|2286

Current chains

Chain A

RNA (2436-MER)

Nearby chains

Chain V

50S ribosomal protein L27