Motif HL_34245.2 Version HL_34245.2 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1J2B_001 | 1J2B | 0.7025 | 0 | C | tRNA | C | 932 | C | 933 | U | 934 | U | 935 | A | 936 | C | 937 | G | 938 | A | 939 | G | 940 | cWW | cWW | |
| 2 | HL_2ZNI_002 | 2ZNI | 0.4794 | 0 | tRNA anticodon loop | C | bacterial tRNA | A | 31 | C | 32 | U | 33 | C | 34 | U | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | cWW |
| 3 | HL_7KGA_001 | 7KGA | 0.0000 | 1 | Anticodon loop related | A | Flavivirus DB element | U | 22 | C | 23 | A | 24 | G | 26 | C | 27 | C | 28 | U | 29 | A | 30 | G | 31 | cWW | ncWW |
| 4 | HL_9AXU_058 | 9AXU | 0.6458 | 0 | 2 | LSU rRNA | A | 2991 | A | 2992 | G | 2993 | C | 2994 | A | 2995 | G | 2996 | A | 2997 | A | 2998 | U | 2999 | cWW | cWw |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUUACGAG | 1 |
| ACUCUAAAU | 1 |
| UCAAGCCUAG | 1 |
| AAGCAGAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUUACGA | 1 |
| CUCUAAA | 1 |
| CAAGCCUA | 1 |
| AGCAGAA | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (2)
- tRNA anticodon loop (1)
- Anticodon loop related (1)
- Basepair signature
- cWW-cWW-F-F-F-F-F
- Heat map statistics
- Min 0.48 | Avg 0.50 | Max 0.79
Coloring options: