HL_7SA4_028

3D structure

PDB id

7SA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

UUAGAAGCA

Length

9 nucleotides

Bulged bases

7SA4|1|1|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SA4_028 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3577

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7SA4|1|1|U|1065
7SA4|1|1|U|1066
7SA4|1|1|A|1067
7SA4|1|1|G|1068
7SA4|1|1|A|1069
7SA4|1|1|A|1070
7SA4|1|1|G|1071
7SA4|1|1|C|1072
7SA4|1|1|A|1073

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L11