HL_7SA4_094

3D structure

PDB id

7SA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Damaged 70S ribosome with PrfH bound

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GGUCCGGCC

Length

9 nucleotides

Bulged bases

7SA4|1|2|C|1136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SA4_094 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.2964

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

7SA4|1|2|G|1133
7SA4|1|2|G|1134
7SA4|1|2|U|1135
7SA4|1|2|C|1136
7SA4|1|2|C|1137
7SA4|1|2|G|1138
7SA4|1|2|G|1139
7SA4|1|2|C|1140
7SA4|1|2|C|1141

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain n

30S ribosomal protein S9