HL_7SAE_012

3D structure

PDB id

7SAE (explore in PDB, NAKB, or RNA 3D Hub)

Description

44SR70P Class1 ribosomal particle

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GUAACAGCC

Length

9 nucleotides

Bulged bases

7SAE|1|A|A|373, 7SAE|1|A|A|374, 7SAE|1|A|C|375

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SAE_012 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.1073

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

7SAE|1|A|G|371
7SAE|1|A|U|372
7SAE|1|A|A|373
7SAE|1|A|A|374
7SAE|1|A|C|375
7SAE|1|A|A|376
7SAE|1|A|G|377
7SAE|1|A|C|378
7SAE|1|A|C|379

Current chains

Chain A

RNA (2434-MER)

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24