HL_7SFR_010

3D structure

PDB id

7SFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmethylated Mtb Ribosome 50S with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUGGGAUG

Length

8 nucleotides

Bulged bases

7SFR|1|A|U|394

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SFR_010 not in the Motif Atlas

Geometric match to HL_5DH6_002

Geometric discrepancy: 0.0964

The information below is about HL_5DH6_002

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.5

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

7SFR|1|A|C|388
7SFR|1|A|U|389
7SFR|1|A|G|390
7SFR|1|A|G|391
7SFR|1|A|G|392
7SFR|1|A|A|393
7SFR|1|A|U|394
7SFR|1|A|G|395

Current chains

Chain A

23S rRNA

Nearby chains

Chain U

50S ribosomal protein L24