HL_7SFR_028

3D structure

PDB id

7SFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unmethylated Mtb Ribosome 50S with SEQ-9

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGAUAAGC

Length

8 nucleotides

Bulged bases

7SFR|1|A|U|1086, 7SFR|1|A|G|1089

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SFR_028 not in the Motif Atlas

Geometric match to HL_7RQB_027

Geometric discrepancy: 0.1387

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

7SFR|1|A|G|1083
7SFR|1|A|G|1084
7SFR|1|A|A|1085
7SFR|1|A|U|1086
7SFR|1|A|A|1087
7SFR|1|A|A|1088
7SFR|1|A|G|1089
7SFR|1|A|C|1090

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L16

Chain v

peptide