HL_7SS9_004

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUUCGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SS9_004 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3302

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

7SS9|1|1|G|136
7SS9|1|1|U|137
7SS9|1|1|U|138
7SS9|1|1|U|139
7SS9|1|1|C|140
7SS9|1|1|G|141
7SS9|1|1|A|142
7SS9|1|1|C|143

Current chains

Chain 1

23S rRNA

Nearby chains

Chain t

50S ribosomal protein L23