HL_7SS9_024

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UCAUCCCGA

Length

9 nucleotides

Bulged bases

7SS9|1|1|U|887, 7SS9|1|1|C|888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SS9_024 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.3061

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7SS9|1|1|U|884
7SS9|1|1|C|885
7SS9|1|1|A|886
7SS9|1|1|U|887
7SS9|1|1|C|888
7SS9|1|1|C|889
7SS9|1|1|C|890
7SS9|1|1|G|891
7SS9|1|1|A|892

Current chains

Chain 1

23S rRNA

Nearby chains

Chain X

30S ribosomal protein S19

Chain e

50S ribosomal protein L5