HL_7SS9_031
3D structure
- PDB id
- 7SS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Late translocation intermediate with EF-G partially dissociated (Structure V)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGAAAAGC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7SS9_031 not in the Motif Atlas
- Homologous match to HL_5J7L_165
- Geometric discrepancy: 0.2771
- The information below is about HL_5J7L_165
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
7SS9|1|1|G|1281
7SS9|1|1|U|1282
7SS9|1|1|G|1283
7SS9|1|1|A|1284
7SS9|1|1|A|1285
7SS9|1|1|A|1286
7SS9|1|1|A|1287
7SS9|1|1|G|1288
7SS9|1|1|C|1289
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain B
- 50S ribosomal protein L32
- Chain n
- 50S ribosomal protein L17
- Chain s
- 50S ribosomal protein L22
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