HL_7SS9_046

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SS9_046 not in the Motif Atlas

Geometric match to HL_6N5P_002

Geometric discrepancy: 0.368

The information below is about HL_6N5P_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64374.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

7SS9|1|1|C|1868
7SS9|1|1|G|1869
7SS9|1|1|C|1870
7SS9|1|1|A|1871
7SS9|1|1|A|1872
7SS9|1|1|G|1873

Current chains

Chain 1

23S rRNA

Nearby chains