HL_7SS9_052

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

7SS9|1|1|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SS9_052 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1931

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

7SS9|1|1|C|2248
7SS9|1|1|U|2249
7SS9|1|1|G|2250
7SS9|1|1|G|2251
7SS9|1|1|G|2252
7SS9|1|1|G|2253
7SS9|1|1|C|2254
7SS9|1|1|G|2255
7SS9|1|1|G|2256

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain m

50S ribosomal protein L16

Chain w

50S ribosomal protein L27