HL_7SS9_060

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

7SS9|1|1|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SS9_060 not in the Motif Atlas

Homologous match to HL_7RQB_061

Geometric discrepancy: 0.1807

The information below is about HL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

7SS9|1|1|U|2528
7SS9|1|1|G|2529
7SS9|1|1|A|2530
7SS9|1|1|A|2531
7SS9|1|1|G|2532
7SS9|1|1|U|2533
7SS9|1|1|A|2534
7SS9|1|1|G|2535

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 8

Elongation factor G

Chain F

50S ribosomal protein L36

Chain f

50S ribosomal protein L6