HL_7SS9_093

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGUGAA

Length

6 nucleotides

Bulged bases

7SS9|1|3|U|1078

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SS9_093 not in the Motif Atlas

Homologous match to HL_5J7L_023

Geometric discrepancy: 0.3218

The information below is about HL_5J7L_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

7SS9|1|3|U|1076
7SS9|1|3|G|1077
7SS9|1|3|U|1078
7SS9|1|3|G|1079
7SS9|1|3|A|1080
7SS9|1|3|A|1081

Current chains

Chain 3

16S rRNA

Nearby chains

Chain G

30S ribosomal protein S2

Chain J

30S ribosomal protein S5