HL_7SS9_106
3D structure
- PDB id
- 7SS9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Late translocation intermediate with EF-G partially dissociated (Structure V)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGCUCAUAACC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7SS9_106 not in the Motif Atlas
- Homologous match to HL_5IB8_208
- Geometric discrepancy: 0.4237
- The information below is about HL_5IB8_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_36684.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
7SS9|1|6|G|30
7SS9|1|6|G|31
7SS9|1|6|C|32
7SS9|1|6|U|33
7SS9|1|6|C|34
7SS9|1|6|A|35
7SS9|1|6|U|36
7SS9|1|6|A|37
7SS9|1|6|A|38
7SS9|1|6|C|39
7SS9|1|6|C|40
Current chains
- Chain 6
- tRNA fMet
Nearby chains
- Chain 3
- Small subunit ribosomal RNA; SSU rRNA
- Chain 4
- mRNA
- Chain 5
- Transfer RNA; tRNA
- Chain N
- 30S ribosomal protein S9
- Chain P
- 30S ribosomal protein S11
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