HL_7SS9_115

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

ACUACGGU

Length

8 nucleotides

Bulged bases

7SS9|1|1|A|1535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SS9_115 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.3778

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7SS9|1|1|A|1532
7SS9|1|1|C|1533
7SS9|1|1|U|1534
7SS9|1|1|A|1535
7SS9|1|1|C|1536
7SS9|1|1|G|1537
7SS9|1|1|G|1538
7SS9|1|1|U|1539

Current chains

Chain 1

23S rRNA

Nearby chains