HL_7SS9_133

3D structure

PDB id

7SS9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Late translocation intermediate with EF-G partially dissociated (Structure V)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCGCAAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SS9_133 not in the Motif Atlas

Geometric match to HL_8KAL_001

Geometric discrepancy: 0.2724

The information below is about HL_8KAL_001

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7SS9|1|3|G|378
7SS9|1|3|C|379
7SS9|1|3|G|380
7SS9|1|3|C|381
7SS9|1|3|A|382
7SS9|1|3|A|383
7SS9|1|3|G|384
7SS9|1|3|C|385

Current chains

Chain 3

16S rRNA

Nearby chains

Chain U

30S ribosomal protein S16