HL_7SSD_024

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UCAUCCCGA

Length

9 nucleotides

Bulged bases

7SSD|1|1|U|887

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSD_024 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.3076

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

7SSD|1|1|U|884
7SSD|1|1|C|885
7SSD|1|1|A|886
7SSD|1|1|U|887
7SSD|1|1|C|888
7SSD|1|1|C|889
7SSD|1|1|C|890
7SSD|1|1|G|891
7SSD|1|1|A|892

Current chains

Chain 1

23S rRNA

Nearby chains

Chain X

30S ribosomal protein S19

Chain e

50S ribosomal protein L5