HL_7SSD_042

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

7SSD|1|1|U|1729, 7SSD|1|1|C|1732

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSD_042 not in the Motif Atlas

Geometric match to HL_5TBW_012

Geometric discrepancy: 0.3271

The information below is about HL_5TBW_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.1

Basepair signature

cWW-F-F

Number of instances in this motif group

7

Unit IDs

7SSD|1|1|C|1727
7SSD|1|1|C|1728
7SSD|1|1|U|1729
7SSD|1|1|C|1730
7SSD|1|1|G|1731
7SSD|1|1|C|1732
7SSD|1|1|G|1733

Current chains

Chain 1

23S rRNA

Nearby chains