HL_7SSD_051

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAAUCC

Length

7 nucleotides

Bulged bases

7SSD|1|1|A|2211, 7SSD|1|1|U|2213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSD_051 not in the Motif Atlas

Homologous match to HL_5J7L_185

Geometric discrepancy: 0.204

The information below is about HL_5J7L_185

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49922.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

7SSD|1|1|G|2209
7SSD|1|1|U|2210
7SSD|1|1|A|2211
7SSD|1|1|A|2212
7SSD|1|1|U|2213
7SSD|1|1|C|2214
7SSD|1|1|C|2215

Current chains

Chain 1

23S rRNA

Nearby chains