3D structure

PDB id
7SSD (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mid translocation intermediate with EF-G bound with GDP (Structure IV)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.3 Å

Loop

Sequence
UGAAUGGAAG
Length
10 nucleotides
Bulged bases
7SSD|1|1|A|2406
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_7SSD_058 not in the Motif Atlas
Homologous match to HL_5J7L_192
Geometric discrepancy: 0.1747
The information below is about HL_5J7L_192
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_53454.2
Basepair signature
cWW-tSH-F-F-F-F-F
Number of instances in this motif group
6

Unit IDs

7SSD|1|1|U|2404
7SSD|1|1|G|2405
7SSD|1|1|A|2406
7SSD|1|1|A|2407
7SSD|1|1|U|2408
7SSD|1|1|G|2409
7SSD|1|1|G|2410
7SSD|1|1|A|2411
7SSD|1|1|A|2412
7SSD|1|1|G|2413

Current chains

Chain 1
23S rRNA

Nearby chains

Chain l
50S ribosomal protein L15

Coloring options:


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