HL_7SSD_060

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

7SSD|1|1|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSD_060 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.1858

The information below is about HL_5J7L_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

7SSD|1|1|U|2528
7SSD|1|1|G|2529
7SSD|1|1|A|2530
7SSD|1|1|A|2531
7SSD|1|1|G|2532
7SSD|1|1|U|2533
7SSD|1|1|A|2534
7SSD|1|1|G|2535

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 8

Elongation factor G

Chain F

50S ribosomal protein L36

Chain f

50S ribosomal protein L6