HL_7SSD_075

3D structure

PDB id

7SSD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mid translocation intermediate with EF-G bound with GDP (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

7SSD|1|3|U|209

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSD_075 not in the Motif Atlas

Homologous match to HL_6CZR_076

Geometric discrepancy: 0.5862

The information below is about HL_6CZR_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34168.3

Basepair signature

cWW-cWW-F

Number of instances in this motif group

11

Unit IDs

7SSD|1|3|C|206
7SSD|1|3|C|207
7SSD|1|3|U|208
7SSD|1|3|U|209
7SSD|1|3|C|210
7SSD|1|3|G|211
7SSD|1|3|G|212
7SSD|1|3|G|213

Current chains

Chain 3

16S rRNA

Nearby chains