HL_7SSD_077
3D structure
- PDB id
- 7SSD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mid translocation intermediate with EF-G bound with GDP (Structure IV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- CUGAGAGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_7SSD_077 not in the Motif Atlas
- Geometric match to HL_7A0S_056
- Geometric discrepancy: 0.2269
- The information below is about HL_7A0S_056
- Detailed Annotation
- GNRA with extra cWW
- Broad Annotation
- GNRA with extra cWW
- Motif group
- HL_04259.3
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
7SSD|1|3|C|295
7SSD|1|3|U|296
7SSD|1|3|G|297
7SSD|1|3|A|298
7SSD|1|3|G|299
7SSD|1|3|A|300
7SSD|1|3|G|301
7SSD|1|3|G|302
Current chains
- Chain 3
- 16S rRNA
Nearby chains
- Chain I
- 30S ribosomal protein S4
- Chain J
- 30S ribosomal protein S5
- Chain Q
- 30S ribosomal protein S12
- Chain V
- 30S ribosomal protein S17
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