HL_7SSL_022

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGAAAGGC

Length

9 nucleotides

Bulged bases

7SSL|1|1|A|781, 7SSL|1|1|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSL_022 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.2281

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

7SSL|1|1|G|778
7SSL|1|1|U|779
7SSL|1|1|G|780
7SSL|1|1|A|781
7SSL|1|1|A|782
7SSL|1|1|A|783
7SSL|1|1|G|784
7SSL|1|1|G|785
7SSL|1|1|C|786

Current chains

Chain 1

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L2