HL_7SSL_043

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSL_043 not in the Motif Atlas

Homologous match to HL_4WF9_042

Geometric discrepancy: 0.2402

The information below is about HL_4WF9_042

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80709.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

7SSL|1|1|C|1752
7SSL|1|1|G|1753
7SSL|1|1|A|1754
7SSL|1|1|A|1755
7SSL|1|1|G|1756

Current chains

Chain 1

23S rRNA

Nearby chains

Chain p

50S ribosomal protein L19