HL_7SSL_044

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

7SSL|1|1|A|1780, 7SSL|1|1|U|1781, 7SSL|1|1|U|1782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSL_044 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.2602

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

7SSL|1|1|U|1777
7SSL|1|1|U|1778
7SSL|1|1|U|1779
7SSL|1|1|A|1780
7SSL|1|1|U|1781
7SSL|1|1|U|1782
7SSL|1|1|A|1783
7SSL|1|1|A|1784
7SSL|1|1|A|1785
7SSL|1|1|A|1786
7SSL|1|1|A|1787

Current chains

Chain 1

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L34

Chain b

50S ribosomal protein L2