HL_7SSL_047

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUAACUAUAAC

Length

11 nucleotides

Bulged bases

7SSL|1|1|A|1913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSL_047 not in the Motif Atlas

Geometric match to HL_5TBW_049

Geometric discrepancy: 0.1733

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

7SSL|1|1|G|1910
7SSL|1|1|U|1911
7SSL|1|1|A|1912
7SSL|1|1|A|1913
7SSL|1|1|C|1914
7SSL|1|1|U|1915
7SSL|1|1|A|1916
7SSL|1|1|U|1917
7SSL|1|1|A|1918
7SSL|1|1|A|1919
7SSL|1|1|C|1920

Current chains

Chain 1

23S rRNA

Nearby chains

Chain 3

Small subunit ribosomal RNA; SSU rRNA

Chain 4

mRNA

Chain 5

Transfer RNA; tRNA