HL_7SSL_058

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

7SSL|1|1|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSL_058 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.1893

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

7SSL|1|1|U|2404
7SSL|1|1|G|2405
7SSL|1|1|A|2406
7SSL|1|1|A|2407
7SSL|1|1|U|2408
7SSL|1|1|G|2409
7SSL|1|1|G|2410
7SSL|1|1|A|2411
7SSL|1|1|A|2412
7SSL|1|1|G|2413

Current chains

Chain 1

23S rRNA

Nearby chains

Chain l

50S ribosomal protein L15