HL_7SSL_083

3D structure

PDB id

7SSL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pre translocation intermediate with EF-G bound to GDP and Pi (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_7SSL_083 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.3058

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

7SSL|1|3|C|522
7SSL|1|3|A|523
7SSL|1|3|G|524
7SSL|1|3|C|525
7SSL|1|3|C|526
7SSL|1|3|G|527

Current chains

Chain 3

16S rRNA

Nearby chains

Chain 4

mRNA

Chain Q

30S ribosomal protein S12